General information for g7693.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Adenosine deaminase 2.
Parent gene
- The parent gene g7693 is located on chr_2: 25296340..25297128 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7693 | g7693.t1 | isoform | g7693.t1 | 25296340 | 25297128 |
| chr_2 | g7693 | g7693.t1 | exon | g7693.t1.exon1 | 25296340 | 25296366 |
| chr_2 | g7693 | g7693.t1 | cds | g7693.t1.CDS1 | 25296340 | 25296366 |
| chr_2 | g7693 | g7693.t1 | exon | g7693.t1.exon2 | 25296609 | 25296814 |
| chr_2 | g7693 | g7693.t1 | cds | g7693.t1.CDS2 | 25296609 | 25296814 |
| chr_2 | g7693 | g7693.t1 | exon | g7693.t1.exon3 | 25296879 | 25297128 |
| chr_2 | g7693 | g7693.t1 | cds | g7693.t1.CDS3 | 25296879 | 25297128 |
| chr_2 | g7693 | g7693.t1 | TTS | g7693.t1 | 25297307 | 25297307 |
| chr_2 | g7693 | g7693.t1 | TSS | g7693.t1 | NA | NA |
Sequences
>g7693.t1 Gene=g7693 Length=483
ATGGGAACAACTTCAGATGAAAATTTGTTTGATGCAATCCTATTAGGAACAAAAAGAATC
GGTCATGGCTATTCACTAGTAAAGTATCCTCACCTTTTGAAAATTGTTAAAGAGAAAAAA
ATTGCCATAGAGATAAATCCAATTTCTAATCAAGTATTGAGACTCGTGGACGACATTCGA
AATCATCCTGCTTCGATTCTCCTAACAGATGATTATCCGATTGTCATCTCAAGTGACGAT
CCTTCTTTCTGGGGCGCAAAGCCATTGAGTCATGATTTTTATTACGCTTTCTTGGGAATG
GCATCAGCACGACAAGACTTAAGAGCCATCAAGCGACTGATATTGAACTCTTTCGATTAT
AGCTCCTTGAATGACATGGAAAAAATACATGCAAAGAAAATATGGAAAGACAAATGGAAT
ACTTTTATAAAAGAATACCTGCATGAACGTTCTTTAAAAACTGTCATTGAAGTTGTGAAT
TAA
>g7693.t1 Gene=g7693 Length=160
MGTTSDENLFDAILLGTKRIGHGYSLVKYPHLLKIVKEKKIAIEINPISNQVLRLVDDIR
NHPASILLTDDYPIVISSDDPSFWGAKPLSHDFYYAFLGMASARQDLRAIKRLILNSFDY
SSLNDMEKIHAKKIWKDKWNTFIKEYLHERSLKTVIEVVN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7693.t1 | Gene3D | G3DSA:3.20.20.140 | - | 1 | 147 | 0 |
| 2 | g7693.t1 | PANTHER | PTHR11409 | ADENOSINE DEAMINASE | 4 | 150 | 0 |
| 3 | g7693.t1 | PANTHER | PTHR11409:SF39 | ADENOSINE DEAMINASE 2 | 4 | 150 | 0 |
| 1 | g7693.t1 | Pfam | PF00962 | Adenosine/AMP deaminase | 6 | 128 | 0 |
| 4 | g7693.t1 | SUPERFAMILY | SSF51556 | Metallo-dependent hydrolases | 4 | 147 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0019239 | deaminase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
