General information for g7711.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Proteasome subunit beta type-1.
Parent gene
- The parent gene g7711 is located on chr_2: 25414668..25416361 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7711 | g7711.t6 | TTS | g7711.t6 | 25414040 | 25414040 |
| chr_2 | g7711 | g7711.t6 | isoform | g7711.t6 | 25414107 | 25414886 |
| chr_2 | g7711 | g7711.t6 | exon | g7711.t6.exon1 | 25414107 | 25414719 |
| chr_2 | g7711 | g7711.t6 | cds | g7711.t6.CDS1 | 25414107 | 25414719 |
| chr_2 | g7711 | g7711.t6 | TSS | g7711.t6 | 25414721 | 25414721 |
| chr_2 | g7711 | g7711.t6 | exon | g7711.t6.exon2 | 25414800 | 25414886 |
| chr_2 | g7711 | g7711.t6 | cds | g7711.t6.CDS2 | 25414800 | 25414810 |
Sequences
>g7711.t6 Gene=g7711 Length=700
ATGCTCGGCATTAATCAATTTCCCGAATATCAAGTTCCTGGAGCCGTTCAACATCAATTC
AATCCATATGAGAACAATGGAGGGTTATTCAATTGTTGCTATTGCTGGAGACAACTTTGC
AGTTATTGGAGCTGACACTCGTTTAAGTGCCGGATACAATATTTTCACAAGAAATCACTC
AAAATTATTTCAATTAACTTCTTCGGCAGTTCTTGCATCTTGTGGCAATTGGTGCGATTC
TGATACTTTAACAAGTATTCTACAGACACGCGTTCGTCAGTATTCAGATACACATGAGAA
CAAAGAGATTAGTTTGAATGCAATAGCTCAATTATTGTCAACAATGATGTATGGTCGCCG
CTTCTTCCCTTATTATGTATCGAATATTTTGGCTGGCATTTACGAAGGCAAGGGATATGT
TTATTCATATGATCCAATAGGTCACTGTGAGCGTCACACATATCGTGCTGGTGGTTCATC
TTCTGCTCTCTTGCAGCCAATTTTAGACAATCAAATTGGATTAAAGAATATGGAAGAGAA
ACCAACTATTCCACTGACTGTCGATCGTGCAGTTAAACTTGTCACTGATACATTCATCTC
AGCTGCAGAACGTGATATTTATACAGGAGATGGAGTAAAAATTTCAATTATTACTGAAAA
TGGTGTTGAAGAACGTCAAATTCCATTAAGAAAAGATTAA
>g7711.t6 Gene=g7711 Length=207
MEGYSIVAIAGDNFAVIGADTRLSAGYNIFTRNHSKLFQLTSSAVLASCGNWCDSDTLTS
ILQTRVRQYSDTHENKEISLNAIAQLLSTMMYGRRFFPYYVSNILAGIYEGKGYVYSYDP
IGHCERHTYRAGGSSSALLQPILDNQIGLKNMEEKPTIPLTVDRAVKLVTDTFISAAERD
IYTGDGVKISIITENGVEERQIPLRKD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g7711.t6 | CDD | cd03757 | proteasome_beta_type_1 | 3 | 207 | 0.000 |
| 5 | g7711.t6 | Gene3D | G3DSA:3.60.20.10 | Glutamine Phosphoribosylpyrophosphate | 1 | 207 | 0.000 |
| 2 | g7711.t6 | PANTHER | PTHR11599:SF59 | PROTEASOME SUBUNIT BETA TYPE-1 | 2 | 206 | 0.000 |
| 3 | g7711.t6 | PANTHER | PTHR11599 | PROTEASOME SUBUNIT ALPHA/BETA | 2 | 206 | 0.000 |
| 1 | g7711.t6 | Pfam | PF00227 | Proteasome subunit | 3 | 192 | 0.000 |
| 6 | g7711.t6 | ProSiteProfiles | PS51476 | Proteasome beta-type subunit profile. | 3 | 192 | 41.779 |
| 4 | g7711.t6 | SUPERFAMILY | SSF56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 3 | 205 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0051603 | proteolysis involved in cellular protein catabolic process | BP |
| GO:0004298 | threonine-type endopeptidase activity | MF |
| GO:0005839 | proteasome core complex | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
