General information for g7712.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Prostaglandin F synthase 1.
Parent gene
- The parent gene g7712 is located on chr_2: 25416361..25417746 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7712 | g7712.t7 | TSS | g7712.t7 | 25415049 | 25415049 |
| chr_2 | g7712 | g7712.t7 | isoform | g7712.t7 | 25415100 | 25416361 |
| chr_2 | g7712 | g7712.t7 | exon | g7712.t7.exon1 | 25415100 | 25415168 |
| chr_2 | g7712 | g7712.t7 | cds | g7712.t7.CDS1 | 25415100 | 25415168 |
| chr_2 | g7712 | g7712.t7 | exon | g7712.t7.exon2 | 25415468 | 25415805 |
| chr_2 | g7712 | g7712.t7 | cds | g7712.t7.CDS2 | 25415468 | 25415805 |
| chr_2 | g7712 | g7712.t7 | exon | g7712.t7.exon3 | 25415878 | 25416361 |
| chr_2 | g7712 | g7712.t7 | cds | g7712.t7.CDS3 | 25415878 | 25416361 |
| chr_2 | g7712 | g7712.t7 | TTS | g7712.t7 | 25416432 | 25416432 |
Sequences
>g7712.t7 Gene=g7712 Length=891
ATGTCAGCTCCCAAAATTAAACTCAATAATGGCTACGAAATACCTGCTCTCGGTTTAGGT
ACCTATTTGAGTAAGGAATTTGATGGTTACAAATTCACTAAATTTGCTTTGGAAAATGGT
TATCGTCATATTGATACAGCGTACTTCTACGAAAATGAAGATTCAGTTGGCAAGGCAATC
AATGAAATCATAAGCGAGAGAAAATTGAAACGTGAAGACATTTTTATCGTCACAAAATTG
TGGAACATACATCATGCTCCAGAACTCGTCGAAATGGCATGTCGCAAGAGTCTTAAAAAT
CTCAATTTGGATTATATTGACCTCTACTTGATGCATACACCTATCGGATATGAATATCGT
GGCGAAGATCCTGAAGTTCTTCTTCCAAAGAATAGTGAAGATGAATTGAGTATTGGAGTT
AGCAACTTCAATTCCGAACAAATTACTAGAATTTTAGAAAACTGTCGCATCAAGCCAGTA
ACAAATCAGGTTGAATGCAATACAACACTCAATCAAAAGAAACTAATTGAATTTTGTAAA
GCAAGAGATATTACAATTACTTCTTATTCGCCTTTAACTCGCCCACATTACTATGAAAAG
GATAAATCAATGCCGAAACCTGCTTTATTAGACGAACGTGTAATTGCTCTTGGTGAAAAA
TATGGAAAAACTCCTGGTCAAATTGTTTTACGCTTCATTTATCAACTTGGAACAATTCCA
ATTCCAAAATCTACAAATGAGCAGAGAATTAAGGATAATATAAATATTTTTGACTTTGAA
TTAACACCAGAAGAGATGACTCTTATGGAAAGTTTTCATACTGGTCAACGATCAGTTCCT
TTTGCAAGTTGTACCAAACACAAATATTTCATGTTCAATATTGAATTTTAA
>g7712.t7 Gene=g7712 Length=296
MSAPKIKLNNGYEIPALGLGTYLSKEFDGYKFTKFALENGYRHIDTAYFYENEDSVGKAI
NEIISERKLKREDIFIVTKLWNIHHAPELVEMACRKSLKNLNLDYIDLYLMHTPIGYEYR
GEDPEVLLPKNSEDELSIGVSNFNSEQITRILENCRIKPVTNQVECNTTLNQKKLIEFCK
ARDITITSYSPLTRPHYYEKDKSMPKPALLDERVIALGEKYGKTPGQIVLRFIYQLGTIP
IPKSTNEQRIKDNINIFDFELTPEEMTLMESFHTGQRSVPFASCTKHKYFMFNIEF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g7712.t7 | Gene3D | G3DSA:3.20.20.100 | - | 1 | 295 | 3.0E-104 |
| 2 | g7712.t7 | PANTHER | PTHR11732:SF482 | ZGC:56622 | 4 | 121 | 4.5E-92 |
| 4 | g7712.t7 | PANTHER | PTHR11732 | ALDO/KETO REDUCTASE | 4 | 121 | 4.5E-92 |
| 3 | g7712.t7 | PANTHER | PTHR11732:SF482 | ZGC:56622 | 137 | 292 | 4.5E-92 |
| 5 | g7712.t7 | PANTHER | PTHR11732 | ALDO/KETO REDUCTASE | 137 | 292 | 4.5E-92 |
| 15 | g7712.t7 | PIRSF | PIRSF000097 | AKR | 1 | 137 | 8.2E-48 |
| 14 | g7712.t7 | PIRSF | PIRSF000097 | AKR | 130 | 296 | 2.8E-44 |
| 6 | g7712.t7 | PRINTS | PR00069 | Aldo-keto reductase signature | 36 | 60 | 6.3E-41 |
| 10 | g7712.t7 | PRINTS | PR00069 | Aldo-keto reductase signature | 96 | 114 | 6.3E-41 |
| 8 | g7712.t7 | PRINTS | PR00069 | Aldo-keto reductase signature | 126 | 143 | 6.3E-41 |
| 9 | g7712.t7 | PRINTS | PR00069 | Aldo-keto reductase signature | 160 | 189 | 6.3E-41 |
| 7 | g7712.t7 | PRINTS | PR00069 | Aldo-keto reductase signature | 208 | 232 | 6.3E-41 |
| 1 | g7712.t7 | Pfam | PF00248 | Aldo/keto reductase family | 30 | 271 | 1.2E-45 |
| 12 | g7712.t7 | ProSitePatterns | PS00798 | Aldo/keto reductase family signature 1. | 40 | 57 | - |
| 11 | g7712.t7 | SUPERFAMILY | SSF51430 | NAD(P)-linked oxidoreductase | 5 | 290 | 1.44E-83 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0047834 | D-threo-aldose 1-dehydrogenase activity | MF |
| GO:0055114 | NA | NA |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed