Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Aldo-keto reductase family 1 member A1-A.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7712 g7712.t9 TSS g7712.t9 25415049 25415049
chr_2 g7712 g7712.t9 isoform g7712.t9 25415429 25416502
chr_2 g7712 g7712.t9 exon g7712.t9.exon1 25415429 25416502
chr_2 g7712 g7712.t9 cds g7712.t9.CDS1 25415672 25416361
chr_2 g7712 g7712.t9 TTS g7712.t9 25416432 25416432

Sequences

>g7712.t9 Gene=g7712 Length=1074
TACCAAGTTAATCATGAATAATTTTTTTTCGCCTTACAGAGTAAGGAATTTGATGGTTAC
AAATTCACTAAATTTGCTTTGGAAAATGGTTATCGTCATATTGATACAGCGTACTTCTAC
GAAAATGAAGATTCAGTTGGCAAGGCAATCAATGAAATCATAAGCGAGAGAAAATTGAAA
CGTGAAGACATTTTTATCGTCACAAAATTGTGGAACATACATCATGCTCCAGAACTCGTC
GAAATGGCATGTCGCAAGAGTCTTAAAAATCTCAATTTGGATTATATTGACCTCTACTTG
ATGCATACACCTATCGGATATGAATATCGTGGCGAAGATCCTGAAGTTCTTCTTCCAAAG
AATAGTGAAGATGAATTATCTTTTTCTGACGTAGATTATTTGGATACATACAAAGCTATG
GAAAAACTTGTTGACCTTGGTCTTGTTAGGAGTATTGGAGTTAGCAACTTCAATTCCGAA
CAAATTACTAGAATTTTAGAAAACTGTCGCATCAAGCCAGTAACAAATCAGGTTGAATGC
AATACAACACTCAATCAAAAGAAACTAATTGAATTTTGTAAAGCAAGAGATATTACAATT
ACTTCTTATTCGCCTTTAACTCGCCCACATTACTATGAAAAGGATAAATCAATGCCGAAA
CCTGCTTTATTAGACGAACGTGTAATTGCTCTTGGTGAAAAATATGGAAAAACTCCTGGT
CAAATTGTTTTACGCTTCATTTATCAACTTGGAACAATTCCAATTCCAAAATCTACAAAT
GAGCAGAGAATTAAGGATAATATAAATATTTTTGACTTTGAATTAACACCAGAAGAGATG
ACTCTTATGGAAAGTTTTCATACTGGTCAACGATCAGTTCCTTTTGCAAGTTGTACCAAA
CACAAATATTTCATGTTCAATATTGAATTTTAAATTTTTTGTGTCAAATCGTTGGATCTT
ATAAATTTTATATCATGAAAAATAAAATATGGGGATTTATATGCATTTAAAAATTTTTTT
ATTTGTTCTACATATTAAGTGTTATTTAAAATTAAGTATGCAAATGGATATTAT

>g7712.t9 Gene=g7712 Length=229
MACRKSLKNLNLDYIDLYLMHTPIGYEYRGEDPEVLLPKNSEDELSFSDVDYLDTYKAME
KLVDLGLVRSIGVSNFNSEQITRILENCRIKPVTNQVECNTTLNQKKLIEFCKARDITIT
SYSPLTRPHYYEKDKSMPKPALLDERVIALGEKYGKTPGQIVLRFIYQLGTIPIPKSTNE
QRIKDNINIFDFELTPEEMTLMESFHTGQRSVPFASCTKHKYFMFNIEF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g7712.t9 Gene3D G3DSA:3.20.20.100 - 1 228 3.8E-81
2 g7712.t9 PANTHER PTHR11732:SF482 ZGC:56622 3 225 5.5E-71
3 g7712.t9 PANTHER PTHR11732 ALDO/KETO REDUCTASE 3 225 5.5E-71
11 g7712.t9 PIRSF PIRSF000097 AKR 1 229 5.7E-70
4 g7712.t9 PRINTS PR00069 Aldo-keto reductase signature 5 23 6.3E-37
6 g7712.t9 PRINTS PR00069 Aldo-keto reductase signature 59 76 6.3E-37
7 g7712.t9 PRINTS PR00069 Aldo-keto reductase signature 93 122 6.3E-37
5 g7712.t9 PRINTS PR00069 Aldo-keto reductase signature 141 165 6.3E-37
1 g7712.t9 Pfam PF00248 Aldo/keto reductase family 2 204 8.2E-40
9 g7712.t9 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 59 76 -
8 g7712.t9 SUPERFAMILY SSF51430 NAD(P)-linked oxidoreductase 2 223 8.77E-64

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0047834 D-threo-aldose 1-dehydrogenase activity MF
GO:0055114 NA NA
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values