General information for g7713.t16
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7713 is located on chr_2: 25417746..25420481 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7713 | g7713.t16 | isoform | g7713.t16 | 25417746 | 25419329 |
| chr_2 | g7713 | g7713.t16 | exon | g7713.t16.exon1 | 25417746 | 25417959 |
| chr_2 | g7713 | g7713.t16 | exon | g7713.t16.exon2 | 25418201 | 25418293 |
| chr_2 | g7713 | g7713.t16 | exon | g7713.t16.exon3 | 25418379 | 25419129 |
| chr_2 | g7713 | g7713.t16 | cds | g7713.t16.CDS1 | 25418966 | 25419129 |
| chr_2 | g7713 | g7713.t16 | exon | g7713.t16.exon4 | 25419190 | 25419329 |
| chr_2 | g7713 | g7713.t16 | cds | g7713.t16.CDS2 | 25419190 | 25419301 |
| chr_2 | g7713 | g7713.t16 | TSS | g7713.t16 | NA | NA |
| chr_2 | g7713 | g7713.t16 | TTS | g7713.t16 | NA | NA |
Sequences
>g7713.t16 Gene=g7713 Length=1198
TCGTCGAAATGGCCGAGAACGCTTTGGTATGTTGTCATCGTTTCCTGCTGTTGGTGGTGG
TGAACTTGCTCTCATCGTTTTAGAAACTTCTAACGTATCTTCTGTAATCACGGGTAATCC
TTCTCTTACTCGATATTCATTTTTGAGTCTTTTAAGTGTATCTGTTCCACCAAGACTAAC
AAGTGAAATTTTCCACAAAAGTAGTAAAACTTTCTTCATTGGAAAATGTGGTGCTGATCC
ACTGCAGAATCTTGTTATCATTCCCAATAATTTTACTGCCAAAAGCTCATCGCCTATAGG
TTGACTAATTTCTTGTACGAAAGCTTCTAACAAATCTTTATATTCACTTTCTGATATTTC
TTTTTCTGCTCTCATAACTTCAGTGATAATATAAAGTACAGATAAAATTACACGAAGATC
AACTGAGTCTGCTAAAGAGACAGCAATTTTCCTGATTGCAACATTTGCTGTAGTAGCATT
TTCGATTTCGAGATTCAATAGTTCTATGAAAGCTTGAAATACACCAGAGCGATAGAGAAG
CATGACATTATATCGACTTAAACTTTGTTGTTCCTCATCTGATTGAACTTCAACCCAACA
TCCTTGAGCAAGATACAAAAGTGTACGAGCTGCTTTCATTCTCATAGTATTATCGAGTAC
TTCTAATTGATCTATGAGTTTTAAAATGATACTGATGTGTTGCTCTTTACTCAATTGCTG
CCATAAAGGCTTTAACTTGTACATTTCCATCTGATCTTCGAATGCTTTAACGTTAAGTTG
AAATTCATTATGCTCAGTATAACTGTATAGTTCTGCAATTTCATTCAGATGAGTGTCAGC
ATCAGCATATGTAAATTCAAGATCCACAAACTCATTTGCTCCATTTGCCGAATCGAAACC
ACCATCATTATCGAAAAAACTGTTTATTGTGAGTCCATCCATTTTATGCTTTTATTTTTT
CAATAAATTATTTGTGTTGCATTAGTCGGAATCATTTAATAGATCCATTATCGTCCAAAA
ATTTCTTAAAACATTGAAATAAATAAAAGAAATACGAAACAATCCCAAATATTTTTTTCT
ACGTCAGGGTTTTTCAAATTTACATAAAACAACGATGTATAAATTCTACATTGCTTGTAG
AATCGGAAAAACATTATCCTCACAATTTTTTTTCCATTTAAAAATTCTTTTATAAAAA
>g7713.t16 Gene=g7713 Length=91
MLSSFPAVGGGELALIVLETSNVSSVITGNPSLTRYSFLSLLSVSVPPRLTSEIFHKSSK
TFFIGKCGADPLQNLVIIPNNFTAKSSSPIG
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
