General information for g7715.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Laminin subunit alpha.
Parent gene
- The parent gene g7715 is located on chr_2: 25424952..25435427 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7715 | g7715.t1 | TSS | g7715.t1 | 25422739 | 25422739 |
| chr_2 | g7715 | g7715.t1 | isoform | g7715.t1 | 25423700 | 25435427 |
| chr_2 | g7715 | g7715.t1 | exon | g7715.t1.exon1 | 25423700 | 25423978 |
| chr_2 | g7715 | g7715.t1 | cds | g7715.t1.CDS1 | 25423700 | 25423978 |
| chr_2 | g7715 | g7715.t1 | exon | g7715.t1.exon2 | 25424044 | 25424178 |
| chr_2 | g7715 | g7715.t1 | cds | g7715.t1.CDS2 | 25424044 | 25424178 |
| chr_2 | g7715 | g7715.t1 | exon | g7715.t1.exon3 | 25424250 | 25424880 |
| chr_2 | g7715 | g7715.t1 | cds | g7715.t1.CDS3 | 25424250 | 25424880 |
| chr_2 | g7715 | g7715.t1 | exon | g7715.t1.exon4 | 25424947 | 25428216 |
| chr_2 | g7715 | g7715.t1 | cds | g7715.t1.CDS4 | 25424947 | 25428216 |
| chr_2 | g7715 | g7715.t1 | exon | g7715.t1.exon5 | 25428274 | 25428563 |
| chr_2 | g7715 | g7715.t1 | cds | g7715.t1.CDS5 | 25428274 | 25428563 |
| chr_2 | g7715 | g7715.t1 | exon | g7715.t1.exon6 | 25428622 | 25428922 |
| chr_2 | g7715 | g7715.t1 | cds | g7715.t1.CDS6 | 25428622 | 25428922 |
| chr_2 | g7715 | g7715.t1 | exon | g7715.t1.exon7 | 25428981 | 25430145 |
| chr_2 | g7715 | g7715.t1 | cds | g7715.t1.CDS7 | 25428981 | 25430145 |
| chr_2 | g7715 | g7715.t1 | exon | g7715.t1.exon8 | 25430276 | 25435128 |
| chr_2 | g7715 | g7715.t1 | cds | g7715.t1.CDS8 | 25430276 | 25435128 |
| chr_2 | g7715 | g7715.t1 | exon | g7715.t1.exon9 | 25435195 | 25435427 |
| chr_2 | g7715 | g7715.t1 | cds | g7715.t1.CDS9 | 25435195 | 25435427 |
| chr_2 | g7715 | g7715.t1 | TTS | g7715.t1 | NA | NA |
Sequences
>g7715.t1 Gene=g7715 Length=11157
ATGAGTGGCTTAAGCCACTTTAATAATTTGATGGCTTTATCAGCAATTTTGTTGATAATT
CTATTACCACTCGCTTATTCTGAAACATTGACACCGCCCTATTTCAATTTGGCTGAAGGA
AGAAAAATTACTGCAAGTTCAACATGCGGTGTAGATATAGATGGACCTGAGCTTTACTGT
AAATTGGTCGGTTCACACACAGATGATCAGCAGAATCAGACAATTGCCGAGGATCAATTT
CATTTTTCAAAAGGTGGTCATGTTGTTATTCAAGGACAGCAATGCGACTATTGTACAGCA
GAATCACATCCGGTTGAAAATGCAATTGATGGAACTGAAAAATGGTGGCAATCTCCTCCA
CTTTCACGTGGTATGAAATATAATGAAGTCAACTTGACAATTGACTTTGGACAAGAGTTT
CATGTCGCATATATTTTCATTCGAATGGGAAATTCACCACGTCCTGGTTTATGGACACTT
GAAAAATCGAGTGATTATGGAAAAACGTGGACACCATGGCAACATTTTTCTGATTCAGAG
ACAGATTGTGAAATTTATTTTGGTAGAGATTCTTTAAAACCGATTACAAAAGATGACGAT
GTTATTTGTACAACAGAGTTTTCAAAGATCGTTCCATTAGAAAGTGGCGAAATTATCGTT
CGTCTTTTAAATTCTCGTCCATCAGCCAACAATTATTTCAATTCAACAGTACTTCAAGAG
TGGTCTAGAGCAACAAACATTCGTATTCGTCTTTTGAGAACTAAAAATTTGCTGGGACAT
CTCATGTCAGTTGCTCGTCAAGATCCAACAGTTACCCGTCGTTATTTCTATTCTATTAAA
GATATTTCAATAGGTGGACGTTGTGTGTGTAATGGTCATGCAAATACTTGTGTATTAGAT
CCAAGAAGCAGAGAAAGTAACATTCGCTTACTTGCATGTTCATGTCAACATAACACTTGT
GGAACACAATGTGAAACTTGTTGCGAGGGTTTTGAACAAAAGAAATGGAGACAAAATACA
AATGCTCGTCCATTTCAATGTGAACCATGTAATTGTCATGGACATTCAAACAGTTGTCAC
TATGATGAAGGCGTTGATTTGAGAGGCGAATCTCTAGATATTCATGGACGTTATGAGGGT
GGTGGTGTTTGCGAAAATTGCCAGCATAATACTGAGGGTATTAATTGTAATAAATGTAAA
TCACGTTTTTATCGGCCATATGGTAGACATTGGAATGAAACTGATGTGTGTCAACCATGT
AACTGCGACTATTTCTATAGCACAGGAAATTGTGAGGAAGAAACAGGTCGATGTGAATGT
CGCGTTGAATTTCAAGCACCTGATTGCGATGCATGTTCTGAAGGTCATTTTGGTTATCCA
AATTGTCGTCCTTGTGAATGCTTCTCTAATGGAACATTGGGAAATTATTGTGAGGCAATA
GATGGAAAGTGTCCATGTAAGAGCAACTTTGGTGGTGATTTTTGTAAAGAATGTGCTCCA
GGATATTATAATTTTCCTGAATGTAGACCTTGTGAATGTAATGAAATTGGATCAGATGGA
AGTACTTGTGATGAACATACTGGACAATGTGTTTGCAAAGCAAATTATGCAGGACTCAAA
TGTGATCAATGCAAAGATGGACATTACGATTATCCAAGTTGTGCTTACTGTAATTGTGAT
ATTTATGGTACAGAGCCTGGAATTTGTAATAAGAAAACAGGAGAATGTTTATGCAAAGAC
GGTTATGGATCGACTCGTTGTGATCATTGTATTCCTGGATTTTACAACTATCCAGAGTGT
GTTCCTTGCAATTGTTCAGTAGCTGGCTCAGTTCAAACTGTTTGTGATTTTAATGGAAAA
TGCCCTTGCTTACAAAATTTTGCAGGCAAACGATGTGATCAATGTATGGCAGGATATTAT
CAATTTCCTGAATGTTTGCCTTGTAATTGCGACAACCATGGTTCAATTGGTATTTCTTGT
AACAATGAAGGTCAATGTAATTGTCAAAATAATTTCGATGGCAAAACTTGCAACACATGT
AAGGAGAATTTCTATAATTATCCACTTTGCGAAAGTTGTGACTGTAATCCAGCGGGTGTA
ATTGCTAAATTTGCTGGTTGTGGCTCAGTGCCTGCAGGAGAACTCTGTCAATGTAAAGAA
CGTGTTCAAGGAAGAATTTGTGATCAATGTCGTCCACTTTATTGGAATTTGAATGTCACA
AATCCAGATGGTTGTGAGGATTGTGATTGTTTGACTGATGGTACTATTGGAGCATTAGAC
ACCTGCGATACAAAGAGTGGTCAATGCAGTTGCAAAAAATTTGTTGGTGGTCGACGTTGT
GATGAGTGTATTGATGGAACATTTGATCTTTTTGGAACATCACTTTTTGGCTGTAAACCA
TGTGGCTGTGATATTGGAGGATCATCAAGTCCAATATGTAATAAACAAAATGGTGAATGC
AGATGCCATCCAAGAATTACTGGTAGAGATTGTACAAGACCCTTACAGCTTCACTACTAT
CCTACACTTTATCAATTGAAATATGAATATGAAGATGGAATGACATCAACTGGTGCTCAA
GTTCGCTATCAATTTGATGAAGACATTTTCCCTGATTTCAGTAAAATCGGTTATGCAGTG
TTTTCACAACTTCAAAATGAGATTACAAATGAAGTTAACATTCAGAAATCATCATTCTAT
CGACTTATCATTCGCTACGTCAATCCAGGATTAGATCCAGTCATTGCCGAAATTTCTGTG
CAATCTGAGAATGCAATTAATCCTGATCAAGATGGAAAGATTGTTTTCAAGCCTAATAAG
AAACCTGAATTTGTGACTATGTCTGGTACGAAAGGCGAAGTGCCGACACCAATTGTGCTC
GATCCTGGCAAATATACAATTGTCATCAAGACCGATCAACCTTTGTATCTTGATTACTTT
GTACTTTTACCAGCTGCTTATTATGAAGCTTCAATTCTTACACGTAATGTTATAAATCCA
TGCAAAATTAATTCAAATATGGGATTATGTCGTTTATATAGATATCCTTCAATTCATTCA
TATAAGCCTGTATTTAATGCACAAGATGCTGCTGAATTTTATAGAAATTTTGAACATCTC
TCAGCAATTAATGAAAATGAGCCATTCCCACTCATCACATCATCACAAAATGAGTTGAAT
TATATAATCAGTGTACCAAAACCAGGACGTTATGTTTTAGTACTCGATTACATTACTGAT
TCTTCATTTAGTGATGCAGTCTTTTTAAGTGTCAATCAAGAAGGCGAATCAGAGCAAGAT
GGAATTATTCTTCTTTATCCATGCACATATGCAATGGTATGTCGTGGTCCAATTATGGAT
AAAGAATCGAGAGAAAAGGTCTTTTTCATTGATGTGAATGATACACTTCCATTTATTATT
AACGGTGACAATGTACAAGGTGTTGCAATTAAATCGCTTACTGCAATTCCTTATGATCAA
TGGTCAACTGATTTTATACAACCACAAGCTGTTTGTGTTCTCAAAAATGGAGCATGTGTG
GAGGCATCATTCATACCTGCACCAAATTCAAAGAAAATTGAGTTTGAATTAGATCAAGAA
GAACGTGTTGCAGTTGAGAACTTGCCAGAATTCGCTTCTAATGGAACAAAGACTGTTTAC
ATCACTGCTGCATCACCAAGTGTTCAATTTAGTAGTAAAGTACATGAAGCAGCACGTTAT
GTAGTTATTGTGCATTATTATCAACCAAATCATCCCAAATTCAACATTATCTATCGCCTT
CAAACTGAAAATCAAAATTATGATGGAAAATTCACATTAAAACATTGCCCATCAACATCA
GGCTGTCGAGATGTTATTGAATTAAATGATGCTTATGCATGGTTTGATATAGGAGATCAA
TTTACATTCTCATTTACAAATTTAAATGAAAATGGCGTATGGCTTGATTACATAATTCTT
GTGCCTGTTGAATTTTATCATAATCAGTTATTAACGGAAGAAGAATTTGATCAAACAAAT
GAATTCTTGAAGGAGTGCGGTCAAGATCACTTCAATATTCAATTAAATGCTTCAGATTTT
TGTAAATCTTCTGTATTTTCACTTACATCAGATTACAATGTGGGCGCATTACCATGCAAT
TGCGATATTGATGGATCAAAATCATTTGAATGTGAACCATTTGGTGGTCAATGTCAATGT
AAAGCTAATATCGTTGGAAGAATGTGTGATGCTTGCAAAACTGGATACTATGGATTCCCT
GAATGTAGACCTTGTTCCTGTCCTAGTACAGCTATTTGTGAAAAACAAACAGGAGAATGT
ATTTGTCCACCACGGGTAACTGGTGAAAAATGTGATCAATGTGTGCCCTATACTTTTGGA
TTTGATCAAATCATTGGTTGCGAGGATTGTAATTGTAATCAATATGGTGTATTAGATGGA
AATCTTCAATGTGACCTTAACAATGGTTCTTGCATTTGTTCACCAAATGTTGTCGGCCGT
GCATGTGATAAATGTGCTTATGGTTTCTTTAATTTCCCATATTGTGGTCCATGTCGATGT
GATTTACGCGGTACAACTTTGGAAGTTTGTGATCAAGATGATGAGACCTGCTTCTGTAAA
AAGAATGTACAAGGAAGAGAATGTAATGAATGTATGGAAGGAACATACAATTTGCAAGAA
AAAAATCCTGATGGCTGTACAAAATGCTTCTGTTTTGGACAAACAACTCGTTGTGAGAAC
GCTTATTTAAGACCATTCGATGTCAGCATGATGAAAAACTTGTCATTACACAATATTAAT
GTGAAGGGAGGAAAATGGGAGAAAGTTGATTGGACAACAGAGGAAATTATTATGGTTAAT
GACACAACAGCTCAGGTCGTCTTGGGTGATGTTGATAATCCAGATTTGCTCGAAGGATAT
GCTTATTTCGGCATGTTGGAATATTTCATCAATCAAAATAATCATTTGACAGCATATGGT
GGATTTTTGAGATATAATCTATACTATACAACTCACATTTTCGGAGATGCATTGATTGGA
CCTGACGTTATTCTTGAAGCAAAAGATATTAAAATTAAACATCTCAATTACCGTCAACCT
GCGGCTTCTCAACCATTTGAAGGAATTATCGAAATGATTGAGTCAAACTTCCAAACGCTT
TCAGGTGCACCAGTGACAAGAGAACAATTCATGACAGTTTTAAGAGATTTGACAAAGATT
TATATAAGAGCTGCATATTTTGACAAGACTCTTACCACATACCTTTCTGATGTTACTCTC
ACATGTGCTGATGAAGATCCAGAAAATTATCATTTGTATCAAGAAATTCCTGCTGAAAAA
TGTTTATGTCCGCCAGGATACACAGGACTATCTTGTGAAAATTGTGCTCCAGGATATTAT
CGAGATCCAAATGGTCCACATGGTGGTTATTGTATTCCTTGCGAATGTAATGGCCATGCA
GCTACTTGTGACTGCAATACAGGAATTTGTGAAAATTGTCAACATCATACAACTGGTGAT
CATTGTGATCAATGTATTGAAGGATATTATGGAAATGCTACATTTGGTTCACCCTATGAT
TGCATGATTTGTTCATGTCCTTTACCATTCGATTCAAATAATTTTGCATACGGTTGTGAA
GTTTCACCTGATGGTTATTCAATTAGTTGTGATTGTAAACCAGGCTACACTGGCCATAAA
TGTCAAAGTTGTGCAAATGGCTATTACGGAAGACCAGAAGTTCCTGGAGAAATATGCAAA
CCTTGCGAATGTTCAGGAAATATCGATCCATCAATGCCTGGTGCTTGTGATAGTGTAACA
GGAGAATGTATTCATTGTTTGAATAATACGTTTGGAACTGCTTGTAATATTTGTGCACCG
GGTTTTTACGGAGATGCTGTCATATTAAAAGATTGCAAGAGCTGTATTTGTGACGACCTT
GGAACTGACCATTGCGACTCAACCACTGGTACTTGCGTTTGTCATCAAAATGTAGTCGGC
GAGAAATGTGACCGCTGCTTAGATGATCATTATGGATTTGAGTCAGGATACGGATGTCTT
CTTTGCGACTGTGGAGTTGCATCAAACAGTACTCAATGTGATGATAATACAGGTGAATGT
GCATGTAAAGTTGGTGTTACTGGACGTCAATGTGATCGTTGCATGCCTGGATTCTGGGAT
TATGGTCCAAATGGCTGCACACCTTGCTCATGCAACACTGAACTCTCAAGAGGTCTTGGT
TGCAATCCTTACACTGGTCAATGCGAATGTCTTCAATCTGTAATTGGTGAAAAATGTGAT
TCTTGTCCTCATCGATGGGTTTTTATAGAAAATCAGGGTTGTGAAGAGTGCGATGGATGT
CATCATGCTCTTTTAAATACAACTGATGCTCTTCATACTCAACTTAAGCCAGTTGTTGAA
GAATTAAGCACTGTTACAAAATCATATTATACCACACAAAAATTGAAGAGATTGAATGAA
GAGGCCGAAGAACTAAAGCCAGAAGTTGAAAAATTAGATCCAACTGTCAATAATCTCTCA
GAACAAATTAATGAAGTTGACTCTCTGGAAATGGACACTAAAAATCATATTAAAAAGTCT
AATTACAATAACGAAAAATCGATTGACTTGAAGAAAGCTAGTAATGATTTGCTTAAAAAT
GCAAATGAAAACAGTGGCAATTTCAAAACTGTTACAACAACAGTGCTTAACACTATAAAA
GAAGTTGCAGATTTGGCAACTAATCTTGATTTGGATGAGAAAAATACACATGATAGAGCT
GTTGAAGAAGCAGAGAGATTTTTAGATTTGATAAAGTCATATGATCCGGAGGTTTTATTC
AAGCCATCACCTAAAGCTGATCAATGCAATGCAGACTTAGTTTTTGGTGATGTTGATAAA
TTTGCTTCACCCATTAAGGAACAAAAAGAGAATTTGGATATATATCAAAAATCACTTGAA
GACTATAACAAGAGACTCGATGACTTGCGTGGAAAAAGCAGAGAAATTGTTATGCAAACT
ATTGCCATTCGTGATCTTAATGCAAAGAATAAAGAGTCGCGTCTCAAACAAAACTTACAG
ACAATTTCCGACCTTTTAAAGGAAGCTGAAGATAGTTTAAAAGAAGGAAAATCATTGAAA
AATAATAGTACAAAACGTCTCGGAGACCTTGACTTGTCATTCGGTGATGCAGAGAGATTA
AGCAAAAAACTTGACAATCTCAACAAAGATTTGGATAAAATTTTGCCGAAAAATGAAGAA
GAGTATCGTGTTATTGCTCCACTAGTTCAAGAAGTTCTTGACCATGTATTGAATTTGGAG
CAAAAGAAAACTGACCTTGCAAATCAATATTCTGATATTACTGCTAACTCTAATGATGCA
ATTAAAGCCGTTGGAGCTTATGCTGAAATCGAAGCTGGTGTAACTATCGCAAGAAACAAA
TCACAAGAAGCATTTGATGATGCTACTAAAGCACTGAACCTTCTCGATGGAATTAGTGAT
CGTGCAGGAAAATCACATCAAGCATCAAATGATTTGGTTCATGAAGGACGCGATGCACTA
TCAAATGTTCAATCTGATTTGAGTCCAACGTTACAAAAATCTAAAGATGATTTGGCAAAA
ATCAAGCAAGACATTGATGCATACACCAATAAACTTAAAGCAATGAATGACTCCGTTGAT
AATGTCAATTCTGATCCATATACTGAACTTTGGAAATTAATTATAAAAAACGCTGATGAT
GCATTAGATTTAAAAACGGTTTCTAATGCTACACTTCAACCAATTTTAGCCAATGTCGAA
AAAGCAGCCGAAAAAACTACAAAGGTTGCTAAAGACGTTGAAAATACCAACAAAGACATT
ATTTTGGCTTCAAGCCAAGTACAAAAAGTTGGTGAACTTGTACCAGGAATTATCGGAATG
ATTGATGAATTGGATGCAAAGAATAAAAAGATTGACGAACTTAGTTCTCAACTTAATACA
GATCTTGATCGACTGAGACGACAAATTGATCAAGCTAGAATTATTGCCAATTCCGTTAAA
GTCGGAATGCACTTTTTGCCAAACACAACTCTCGAAATCAAGACACCAGAAAACATTCAA
TCACAAACATTTAATACTAGAATTTCTACTCATTTCAAGACTGATAAGCCTAATGGCTTC
TTGCTGTATCTTGGCAATGAACAAAAAACTCAAAAACAAAAACGTGCTGACTTTATGGCA
ATTGAAATTGAAAATGGCTATCCAGTTTTGATTGCTGATTTTGGTGATGGACCAGAAAGA
GTTATCAGTAATAAATTGGTTGATGACAACAAATGGTATGAAGCAATTGTTGATAGAAAA
GGAAATGATATTACATTTATAATTCGTGAAGAAGATGACCAAGGCGAAGAACAATTGCAT
GAAAAGAAGGAAACACTTCCAGGCGAACAAACAAACTTCCGCTTGGATGAAAATAGTCGT
CTCTTTGTTGGTGGCTATAGTGATTATCAAATGCCAGAAAGTATCAAGCAATCATCATTT
GAAGGAGAAATTGAAGCACTAAAGATTGGAGAAAGTGATGTAGGTTTATGGAATTTCGTT
GATGCTGAAAATACAAATGGTGCTTTTGAACGTGATCGATTGATTACAAAGGAAGCCAAG
TACACTGGTTATCGATTTGGTGGAAACGGTTATGTAGTGCTTGATGCAAGACCATTCAAT
TTCAAACAACGCTCGCATATCAGTTTCAAATTCAAGGCCTCACGTGATTCACCCAATGGA
TTATTATTCTTTGTTGGAAGCGAAGAACATTACATTTCTTTGGAGTTGTGTGATGGAAAT
GTTGTTTTCCGTTTCAAACTTGGTCAAGCATCACAAACTGTTGAAATTAAGACAGAACAT
CTCTTTAACGATGATGAATGGCACAAAGTCGAAGCCGCACGTGAATCTGGTAATGGTGAA
CTTATCGTCGATGACCATCGTTTGTACGAGAGCACACTTTATGCTTCTGGAAATTATAGA
GTACCTGATAAAATGTACTTTGGTGGCTATCCTGATAGAATGTTCTTGTCAGGTATTCAG
ACTAGAAACTTTGACGGCTGCATAGATGACGTTCAAATTGAAGGCACTCCAATTGATTTA
ACAAGAAACCTTGAATCACATGATGTACTTGCTGGCTGTCCACAGAAATTCTCATCAGTT
GTTGGATTTGCTGCTGATAAATATGGCTATTTGAAACTCAGAAATCTCACTATTGGCAAT
AAACTTAACATTAATTTGAAATTCAAAACTATTCAATCACATGGTGTGCTATTCTATGGA
ATGAATAATGATCAAACTGCTACAATTTCATTAGCACTTGAAGATGGAATTTTAGTATTT
AGAAGCTCAAAATATGAATTAAATACTGATTTAAATAAATTTGATGATGGAGAATGGCAC
GTTGTCACTGCAATACATGATGGAAAACGACTTAAATTATCAATTGATGATATTTATGAC
TTCTCGTCACGTGAAGCACCCCCAGCACTCTATGTGAATTTTGGTGAAATTTATTTCGGT
GGTTTGCCATTAGGATTTAAATCAATGAAGGGAGCACTTTCTAATGAGGCTTACTTTGTT
GGATGCATACAAGATGTCACAATCAATAATAATGTTATCAACTTTGCAAGTTCAACAGAT
AAATCAAATGCCATTCTTAATAGCTGCCCACGCGATATTCTCGATTTTGATAAGTATAAA
CTTGTTCGCTACTATCCAAATGGAAAGACAGAAAATCCTAAACCACCAGAAGAAGATTTC
GATACGAGATTTTCAATTGATGAAAATGAAATTGAGAAGGACGATCGAAAAGATGTTGAT
GTTTCATTAGCACCTATAACAACAACCACAATAACAACATCGTCAACAACAACAGAAAAA
GCAATAGAGACTGAGGTCACTCCAATTCCAATACCGATCACGACACAAGCACCAACCACA
ACAACTGTTACAACTACAACGAAAGTATATTCAATTGATCAAAAACATCCCGAATGTGTG
CTGCCAGTTGTTCCAGAGTATGATGTTGATTTCGAATCGGCAGGCTATCGTTTTGGAACT
AAACCTTCAAGCTATCTTGAGTATTCATCTAATCCTGATGCTACTAAAACAGCTTACAGT
TTTTCACTTACATTCCGCACAGACAAACAAAATGGATTATTATTCTATTCATCAGATGAA
AGACATACTAATTTTGTATCAGTTTATCTTAAAAATGGTTATCTTACACATATCTTCAGT
TGCAGTGGTGCTTCAATTAATCTCACATCCGAAAAACAATTTGATAATGGCGAATGGCAC
ACAATAACTTTCTCAAGAGAAAATAAGAAGGTCACACTAAAAGATGAAACTAATGAGGAG
AAGAGTCAAGATTTGAAAGTTAAATGCCGTAACATGGATCTGAAGAAAAGCTATTTTGTT
GGTGGTGCCAACGAAAAAGATCTCGAGGATATCGAACTCAACCTGAATCTCGAAAAAGGT
CACTTCAGCAAGAACGCATTCTTTGGATGTATTAAAGATGTTAAGTTGAATAATACAGAC
ATACAACTTGCAGAATTCCCATCAGATAACGTCTTACCTTGCTCGGATCTTATCGAAAAA
GGTGTCTTCTTCGGCAAGAGTGGTGGTTATGTAAAATTGCGTGAAAAGTTCAAGGTTGGA
ACTGACATGACAATTTCAATGGATATTAAGCCAAGAAATCTTACCGGTGTTCTTACATCC
GTTCACGGAAAGAAATCATTCTTCATTGTTGAAATGATTAAAGGAAATATTCACTTCTCA
GTTGATAGTGGTGATGGTCCAAGAACAGTCATTTTCCAACCCGATCCTGATCAAAGTTTA
TGTGACGGTAACTGGCATACTGTAACAGTCATCAAATCAAGATTCATTTTGTCAATCAAT
GTTGATCAATTTTCATCGGAACCAAATGTTGGAAATCCTGAAAAGCACACTATGGTAGAC
ACAACTCGACCATTATTTGTAGGAGGTCATCCACATTTAGCCAAAATCAGAGGTCTTAAA
GGTCGTCAACCTTACCAAGGATGCATAAGAAACTTCAAAATAAACGATGTCACTGAAAAG
ATAACTGCATCAATGACTACAGGACATGTCGAAACTGGCGTTTGTCATTTAAGATAA
>g7715.t1 Gene=g7715 Length=3718
MSGLSHFNNLMALSAILLIILLPLAYSETLTPPYFNLAEGRKITASSTCGVDIDGPELYC
KLVGSHTDDQQNQTIAEDQFHFSKGGHVVIQGQQCDYCTAESHPVENAIDGTEKWWQSPP
LSRGMKYNEVNLTIDFGQEFHVAYIFIRMGNSPRPGLWTLEKSSDYGKTWTPWQHFSDSE
TDCEIYFGRDSLKPITKDDDVICTTEFSKIVPLESGEIIVRLLNSRPSANNYFNSTVLQE
WSRATNIRIRLLRTKNLLGHLMSVARQDPTVTRRYFYSIKDISIGGRCVCNGHANTCVLD
PRSRESNIRLLACSCQHNTCGTQCETCCEGFEQKKWRQNTNARPFQCEPCNCHGHSNSCH
YDEGVDLRGESLDIHGRYEGGGVCENCQHNTEGINCNKCKSRFYRPYGRHWNETDVCQPC
NCDYFYSTGNCEEETGRCECRVEFQAPDCDACSEGHFGYPNCRPCECFSNGTLGNYCEAI
DGKCPCKSNFGGDFCKECAPGYYNFPECRPCECNEIGSDGSTCDEHTGQCVCKANYAGLK
CDQCKDGHYDYPSCAYCNCDIYGTEPGICNKKTGECLCKDGYGSTRCDHCIPGFYNYPEC
VPCNCSVAGSVQTVCDFNGKCPCLQNFAGKRCDQCMAGYYQFPECLPCNCDNHGSIGISC
NNEGQCNCQNNFDGKTCNTCKENFYNYPLCESCDCNPAGVIAKFAGCGSVPAGELCQCKE
RVQGRICDQCRPLYWNLNVTNPDGCEDCDCLTDGTIGALDTCDTKSGQCSCKKFVGGRRC
DECIDGTFDLFGTSLFGCKPCGCDIGGSSSPICNKQNGECRCHPRITGRDCTRPLQLHYY
PTLYQLKYEYEDGMTSTGAQVRYQFDEDIFPDFSKIGYAVFSQLQNEITNEVNIQKSSFY
RLIIRYVNPGLDPVIAEISVQSENAINPDQDGKIVFKPNKKPEFVTMSGTKGEVPTPIVL
DPGKYTIVIKTDQPLYLDYFVLLPAAYYEASILTRNVINPCKINSNMGLCRLYRYPSIHS
YKPVFNAQDAAEFYRNFEHLSAINENEPFPLITSSQNELNYIISVPKPGRYVLVLDYITD
SSFSDAVFLSVNQEGESEQDGIILLYPCTYAMVCRGPIMDKESREKVFFIDVNDTLPFII
NGDNVQGVAIKSLTAIPYDQWSTDFIQPQAVCVLKNGACVEASFIPAPNSKKIEFELDQE
ERVAVENLPEFASNGTKTVYITAASPSVQFSSKVHEAARYVVIVHYYQPNHPKFNIIYRL
QTENQNYDGKFTLKHCPSTSGCRDVIELNDAYAWFDIGDQFTFSFTNLNENGVWLDYIIL
VPVEFYHNQLLTEEEFDQTNEFLKECGQDHFNIQLNASDFCKSSVFSLTSDYNVGALPCN
CDIDGSKSFECEPFGGQCQCKANIVGRMCDACKTGYYGFPECRPCSCPSTAICEKQTGEC
ICPPRVTGEKCDQCVPYTFGFDQIIGCEDCNCNQYGVLDGNLQCDLNNGSCICSPNVVGR
ACDKCAYGFFNFPYCGPCRCDLRGTTLEVCDQDDETCFCKKNVQGRECNECMEGTYNLQE
KNPDGCTKCFCFGQTTRCENAYLRPFDVSMMKNLSLHNINVKGGKWEKVDWTTEEIIMVN
DTTAQVVLGDVDNPDLLEGYAYFGMLEYFINQNNHLTAYGGFLRYNLYYTTHIFGDALIG
PDVILEAKDIKIKHLNYRQPAASQPFEGIIEMIESNFQTLSGAPVTREQFMTVLRDLTKI
YIRAAYFDKTLTTYLSDVTLTCADEDPENYHLYQEIPAEKCLCPPGYTGLSCENCAPGYY
RDPNGPHGGYCIPCECNGHAATCDCNTGICENCQHHTTGDHCDQCIEGYYGNATFGSPYD
CMICSCPLPFDSNNFAYGCEVSPDGYSISCDCKPGYTGHKCQSCANGYYGRPEVPGEICK
PCECSGNIDPSMPGACDSVTGECIHCLNNTFGTACNICAPGFYGDAVILKDCKSCICDDL
GTDHCDSTTGTCVCHQNVVGEKCDRCLDDHYGFESGYGCLLCDCGVASNSTQCDDNTGEC
ACKVGVTGRQCDRCMPGFWDYGPNGCTPCSCNTELSRGLGCNPYTGQCECLQSVIGEKCD
SCPHRWVFIENQGCEECDGCHHALLNTTDALHTQLKPVVEELSTVTKSYYTTQKLKRLNE
EAEELKPEVEKLDPTVNNLSEQINEVDSLEMDTKNHIKKSNYNNEKSIDLKKASNDLLKN
ANENSGNFKTVTTTVLNTIKEVADLATNLDLDEKNTHDRAVEEAERFLDLIKSYDPEVLF
KPSPKADQCNADLVFGDVDKFASPIKEQKENLDIYQKSLEDYNKRLDDLRGKSREIVMQT
IAIRDLNAKNKESRLKQNLQTISDLLKEAEDSLKEGKSLKNNSTKRLGDLDLSFGDAERL
SKKLDNLNKDLDKILPKNEEEYRVIAPLVQEVLDHVLNLEQKKTDLANQYSDITANSNDA
IKAVGAYAEIEAGVTIARNKSQEAFDDATKALNLLDGISDRAGKSHQASNDLVHEGRDAL
SNVQSDLSPTLQKSKDDLAKIKQDIDAYTNKLKAMNDSVDNVNSDPYTELWKLIIKNADD
ALDLKTVSNATLQPILANVEKAAEKTTKVAKDVENTNKDIILASSQVQKVGELVPGIIGM
IDELDAKNKKIDELSSQLNTDLDRLRRQIDQARIIANSVKVGMHFLPNTTLEIKTPENIQ
SQTFNTRISTHFKTDKPNGFLLYLGNEQKTQKQKRADFMAIEIENGYPVLIADFGDGPER
VISNKLVDDNKWYEAIVDRKGNDITFIIREEDDQGEEQLHEKKETLPGEQTNFRLDENSR
LFVGGYSDYQMPESIKQSSFEGEIEALKIGESDVGLWNFVDAENTNGAFERDRLITKEAK
YTGYRFGGNGYVVLDARPFNFKQRSHISFKFKASRDSPNGLLFFVGSEEHYISLELCDGN
VVFRFKLGQASQTVEIKTEHLFNDDEWHKVEAARESGNGELIVDDHRLYESTLYASGNYR
VPDKMYFGGYPDRMFLSGIQTRNFDGCIDDVQIEGTPIDLTRNLESHDVLAGCPQKFSSV
VGFAADKYGYLKLRNLTIGNKLNINLKFKTIQSHGVLFYGMNNDQTATISLALEDGILVF
RSSKYELNTDLNKFDDGEWHVVTAIHDGKRLKLSIDDIYDFSSREAPPALYVNFGEIYFG
GLPLGFKSMKGALSNEAYFVGCIQDVTINNNVINFASSTDKSNAILNSCPRDILDFDKYK
LVRYYPNGKTENPKPPEEDFDTRFSIDENEIEKDDRKDVDVSLAPITTTTITTSSTTTEK
AIETEVTPIPIPITTQAPTTTTVTTTTKVYSIDQKHPECVLPVVPEYDVDFESAGYRFGT
KPSSYLEYSSNPDATKTAYSFSLTFRTDKQNGLLFYSSDERHTNFVSVYLKNGYLTHIFS
CSGASINLTSEKQFDNGEWHTITFSRENKKVTLKDETNEEKSQDLKVKCRNMDLKKSYFV
GGANEKDLEDIELNLNLEKGHFSKNAFFGCIKDVKLNNTDIQLAEFPSDNVLPCSDLIEK
GVFFGKSGGYVKLREKFKVGTDMTISMDIKPRNLTGVLTSVHGKKSFFIVEMIKGNIHFS
VDSGDGPRTVIFQPDPDQSLCDGNWHTVTVIKSRFILSINVDQFSSEPNVGNPEKHTMVD
TTRPLFVGGHPHLAKIRGLKGRQPYQGCIRNFKINDVTEKITASMTTGHVETGVCHLR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 120 | g7715.t1 | CDD | cd00055 | EGF_Lam | 287 | 331 | 3.2269E-4 |
| 123 | g7715.t1 | CDD | cd00055 | EGF_Lam | 349 | 406 | 1.24222E-4 |
| 127 | g7715.t1 | CDD | cd00055 | EGF_Lam | 419 | 460 | 3.75536E-6 |
| 131 | g7715.t1 | CDD | cd00055 | EGF_Lam | 464 | 507 | 8.22847E-11 |
| 128 | g7715.t1 | CDD | cd00055 | EGF_Lam | 510 | 553 | 7.37407E-15 |
| 118 | g7715.t1 | CDD | cd00055 | EGF_Lam | 557 | 599 | 3.67558E-10 |
| 125 | g7715.t1 | CDD | cd00055 | EGF_Lam | 602 | 644 | 1.14747E-10 |
| 126 | g7715.t1 | CDD | cd00055 | EGF_Lam | 647 | 689 | 4.0534E-10 |
| 124 | g7715.t1 | CDD | cd00055 | EGF_Lam | 692 | 746 | 3.45907E-5 |
| 135 | g7715.t1 | CDD | cd00055 | EGF_Lam | 748 | 799 | 3.96299E-8 |
| 122 | g7715.t1 | CDD | cd00055 | EGF_Lam | 800 | 839 | 5.99189E-7 |
| 114 | g7715.t1 | CDD | cd02795 | CBM6-CBM35-CBM36_like | 847 | 982 | 8.23883E-7 |
| 115 | g7715.t1 | CDD | cd00055 | EGF_Lam | 1378 | 1421 | 8.1597E-13 |
| 116 | g7715.t1 | CDD | cd00055 | EGF_Lam | 1424 | 1468 | 2.76074E-7 |
| 129 | g7715.t1 | CDD | cd00055 | EGF_Lam | 1470 | 1519 | 4.54804E-9 |
| 132 | g7715.t1 | CDD | cd00055 | EGF_Lam | 1517 | 1567 | 4.45984E-9 |
| 117 | g7715.t1 | CDD | cd00055 | EGF_Lam | 1780 | 1808 | 1.37321E-5 |
| 119 | g7715.t1 | CDD | cd00055 | EGF_Lam | 1813 | 1856 | 8.51514E-12 |
| 134 | g7715.t1 | CDD | cd00055 | EGF_Lam | 1890 | 1917 | 5.82472E-5 |
| 130 | g7715.t1 | CDD | cd00055 | EGF_Lam | 1921 | 1973 | 5.75298E-9 |
| 121 | g7715.t1 | CDD | cd00055 | EGF_Lam | 1974 | 2019 | 1.03538E-8 |
| 133 | g7715.t1 | CDD | cd00055 | EGF_Lam | 2022 | 2067 | 9.20772E-12 |
| 136 | g7715.t1 | CDD | cd00055 | EGF_Lam | 2068 | 2102 | 6.17087E-7 |
| 138 | g7715.t1 | CDD | cd00110 | LamG | 2682 | 2849 | 5.13494E-23 |
| 137 | g7715.t1 | CDD | cd00110 | LamG | 2883 | 3033 | 9.10125E-35 |
| 141 | g7715.t1 | CDD | cd00110 | LamG | 3066 | 3209 | 4.33652E-28 |
| 140 | g7715.t1 | CDD | cd00110 | LamG | 3355 | 3517 | 3.24345E-28 |
| 139 | g7715.t1 | CDD | cd00110 | LamG | 3541 | 3695 | 3.00855E-32 |
| 108 | g7715.t1 | Coils | Coil | Coil | 2305 | 2339 | - |
| 107 | g7715.t1 | Coils | Coil | Coil | 2352 | 2372 | - |
| 106 | g7715.t1 | Coils | Coil | Coil | 2429 | 2456 | - |
| 104 | g7715.t1 | Coils | Coil | Coil | 2531 | 2565 | - |
| 103 | g7715.t1 | Coils | Coil | Coil | 2596 | 2616 | - |
| 105 | g7715.t1 | Coils | Coil | Coil | 2648 | 2675 | - |
| 76 | g7715.t1 | Gene3D | G3DSA:2.60.120.1490 | - | 78 | 315 | 3.2E-93 |
| 87 | g7715.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 316 | 428 | 2.7E-33 |
| 96 | g7715.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 463 | 510 | 1.1E-9 |
| 95 | g7715.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 511 | 556 | 1.6E-10 |
| 90 | g7715.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 557 | 602 | 2.5E-8 |
| 92 | g7715.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 603 | 647 | 8.0E-8 |
| 88 | g7715.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 648 | 692 | 4.7E-6 |
| 80 | g7715.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 693 | 746 | 9.8E-13 |
| 79 | g7715.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 747 | 799 | 4.2E-10 |
| 93 | g7715.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 800 | 842 | 2.9E-5 |
| 102 | g7715.t1 | Gene3D | G3DSA:2.60.120.260 | - | 843 | 986 | 5.0E-6 |
| 89 | g7715.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 1378 | 1426 | 6.2E-11 |
| 82 | g7715.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 1427 | 1468 | 1.9E-6 |
| 84 | g7715.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 1469 | 1516 | 2.9E-11 |
| 78 | g7715.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 1517 | 1568 | 3.7E-9 |
| 86 | g7715.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 1761 | 1813 | 8.9E-7 |
| 91 | g7715.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 1814 | 1861 | 1.2E-10 |
| 94 | g7715.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 1864 | 1921 | 1.3E-8 |
| 85 | g7715.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 1922 | 1974 | 2.8E-16 |
| 81 | g7715.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 1975 | 2020 | 9.8E-11 |
| 77 | g7715.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 2021 | 2067 | 2.5E-9 |
| 83 | g7715.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 2068 | 2116 | 1.0E-7 |
| 101 | g7715.t1 | Gene3D | G3DSA:2.60.120.200 | - | 2673 | 2866 | 3.7E-38 |
| 100 | g7715.t1 | Gene3D | G3DSA:2.60.120.200 | - | 2867 | 3058 | 1.4E-38 |
| 99 | g7715.t1 | Gene3D | G3DSA:2.60.120.200 | - | 3059 | 3230 | 8.3E-33 |
| 98 | g7715.t1 | Gene3D | G3DSA:2.60.120.200 | - | 3357 | 3534 | 1.4E-86 |
| 97 | g7715.t1 | Gene3D | G3DSA:2.60.120.200 | - | 3535 | 3694 | 1.4E-86 |
| 32 | g7715.t1 | PANTHER | PTHR10574 | NETRIN/LAMININ-RELATED | 27 | 524 | 0.0 |
| 40 | g7715.t1 | PANTHER | PTHR10574:SF406 | LAMININ SUBUNIT ALPHA | 27 | 524 | 0.0 |
| 36 | g7715.t1 | PANTHER | PTHR10574 | NETRIN/LAMININ-RELATED | 510 | 577 | 0.0 |
| 44 | g7715.t1 | PANTHER | PTHR10574:SF406 | LAMININ SUBUNIT ALPHA | 510 | 577 | 0.0 |
| 35 | g7715.t1 | PANTHER | PTHR10574 | NETRIN/LAMININ-RELATED | 569 | 617 | 0.0 |
| 43 | g7715.t1 | PANTHER | PTHR10574:SF406 | LAMININ SUBUNIT ALPHA | 569 | 617 | 0.0 |
| 33 | g7715.t1 | PANTHER | PTHR10574 | NETRIN/LAMININ-RELATED | 600 | 754 | 0.0 |
| 41 | g7715.t1 | PANTHER | PTHR10574:SF406 | LAMININ SUBUNIT ALPHA | 600 | 754 | 0.0 |
| 34 | g7715.t1 | PANTHER | PTHR10574 | NETRIN/LAMININ-RELATED | 767 | 1929 | 0.0 |
| 42 | g7715.t1 | PANTHER | PTHR10574:SF406 | LAMININ SUBUNIT ALPHA | 767 | 1929 | 0.0 |
| 37 | g7715.t1 | PANTHER | PTHR10574 | NETRIN/LAMININ-RELATED | 1919 | 2013 | 0.0 |
| 45 | g7715.t1 | PANTHER | PTHR10574:SF406 | LAMININ SUBUNIT ALPHA | 1919 | 2013 | 0.0 |
| 31 | g7715.t1 | PANTHER | PTHR10574 | NETRIN/LAMININ-RELATED | 2010 | 2117 | 0.0 |
| 39 | g7715.t1 | PANTHER | PTHR10574:SF406 | LAMININ SUBUNIT ALPHA | 2010 | 2117 | 0.0 |
| 30 | g7715.t1 | PANTHER | PTHR10574 | NETRIN/LAMININ-RELATED | 2065 | 3080 | 0.0 |
| 38 | g7715.t1 | PANTHER | PTHR10574:SF406 | LAMININ SUBUNIT ALPHA | 2065 | 3080 | 0.0 |
| 47 | g7715.t1 | PRINTS | PR00011 | Type III EGF-like signature | 1433 | 1451 | 2.0E-18 |
| 49 | g7715.t1 | PRINTS | PR00011 | Type III EGF-like signature | 2033 | 2051 | 2.0E-18 |
| 46 | g7715.t1 | PRINTS | PR00011 | Type III EGF-like signature | 2052 | 2080 | 2.0E-18 |
| 48 | g7715.t1 | PRINTS | PR00011 | Type III EGF-like signature | 2081 | 2099 | 2.0E-18 |
| 1 | g7715.t1 | Pfam | PF00055 | Laminin N-terminal (Domain VI) | 31 | 286 | 4.9E-71 |
| 11 | g7715.t1 | Pfam | PF00053 | Laminin EGF domain | 350 | 405 | 3.5E-4 |
| 12 | g7715.t1 | Pfam | PF00053 | Laminin EGF domain | 420 | 461 | 5.6E-4 |
| 15 | g7715.t1 | Pfam | PF00053 | Laminin EGF domain | 465 | 508 | 9.4E-7 |
| 7 | g7715.t1 | Pfam | PF00053 | Laminin EGF domain | 511 | 553 | 2.8E-10 |
| 2 | g7715.t1 | Pfam | PF00053 | Laminin EGF domain | 557 | 599 | 1.3E-7 |
| 6 | g7715.t1 | Pfam | PF00053 | Laminin EGF domain | 603 | 644 | 1.0E-8 |
| 17 | g7715.t1 | Pfam | PF00053 | Laminin EGF domain | 648 | 688 | 8.5E-7 |
| 13 | g7715.t1 | Pfam | PF00053 | Laminin EGF domain | 693 | 745 | 2.7E-7 |
| 14 | g7715.t1 | Pfam | PF00053 | Laminin EGF domain | 748 | 793 | 4.6E-7 |
| 21 | g7715.t1 | Pfam | PF00053 | Laminin EGF domain | 801 | 835 | 8.8E-5 |
| 5 | g7715.t1 | Pfam | PF00053 | Laminin EGF domain | 1379 | 1427 | 9.4E-10 |
| 20 | g7715.t1 | Pfam | PF00053 | Laminin EGF domain | 1470 | 1513 | 1.9E-7 |
| 10 | g7715.t1 | Pfam | PF00053 | Laminin EGF domain | 1518 | 1566 | 4.4E-8 |
| 28 | g7715.t1 | Pfam | PF00052 | Laminin B (Domain IV) | 1653 | 1766 | 8.9E-24 |
| 18 | g7715.t1 | Pfam | PF00053 | Laminin EGF domain | 1780 | 1806 | 3.3E-4 |
| 19 | g7715.t1 | Pfam | PF00053 | Laminin EGF domain | 1814 | 1861 | 1.5E-7 |
| 9 | g7715.t1 | Pfam | PF00053 | Laminin EGF domain | 1864 | 1919 | 6.0E-5 |
| 8 | g7715.t1 | Pfam | PF00053 | Laminin EGF domain | 1922 | 1966 | 7.4E-8 |
| 4 | g7715.t1 | Pfam | PF00053 | Laminin EGF domain | 1975 | 2019 | 3.1E-7 |
| 3 | g7715.t1 | Pfam | PF00053 | Laminin EGF domain | 2022 | 2066 | 6.7E-8 |
| 16 | g7715.t1 | Pfam | PF00053 | Laminin EGF domain | 2069 | 2111 | 0.0014 |
| 29 | g7715.t1 | Pfam | PF06008 | Laminin Domain I | 2139 | 2387 | 3.4E-12 |
| 22 | g7715.t1 | Pfam | PF06009 | Laminin Domain II | 2577 | 2701 | 9.6E-16 |
| 24 | g7715.t1 | Pfam | PF02210 | Laminin G domain | 2712 | 2851 | 2.7E-20 |
| 27 | g7715.t1 | Pfam | PF02210 | Laminin G domain | 2917 | 3035 | 2.8E-23 |
| 26 | g7715.t1 | Pfam | PF02210 | Laminin G domain | 3088 | 3210 | 9.1E-18 |
| 25 | g7715.t1 | Pfam | PF02210 | Laminin G domain | 3385 | 3518 | 8.0E-22 |
| 23 | g7715.t1 | Pfam | PF02210 | Laminin G domain | 3570 | 3696 | 7.4E-20 |
| 110 | g7715.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 27 | - |
| 111 | g7715.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 11 | - |
| 112 | g7715.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 12 | 22 | - |
| 113 | g7715.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 23 | 27 | - |
| 109 | g7715.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 28 | 3718 | - |
| 182 | g7715.t1 | ProSitePatterns | PS01248 | Laminin-type EGF-like (LE) domain signature. | 621 | 650 | - |
| 187 | g7715.t1 | ProSitePatterns | PS01248 | Laminin-type EGF-like (LE) domain signature. | 769 | 803 | - |
| 185 | g7715.t1 | ProSitePatterns | PS01248 | Laminin-type EGF-like (LE) domain signature. | 1398 | 1433 | - |
| 186 | g7715.t1 | ProSitePatterns | PS01248 | Laminin-type EGF-like (LE) domain signature. | 1491 | 1520 | - |
| 181 | g7715.t1 | ProSitePatterns | PS00022 | EGF-like domain signature 1. | 1781 | 1792 | - |
| 184 | g7715.t1 | ProSitePatterns | PS01248 | Laminin-type EGF-like (LE) domain signature. | 1830 | 1866 | - |
| 183 | g7715.t1 | ProSitePatterns | PS01248 | Laminin-type EGF-like (LE) domain signature. | 2040 | 2071 | - |
| 215 | g7715.t1 | ProSiteProfiles | PS51117 | Laminin N-terminal domain profile. | 26 | 287 | 52.533 |
| 190 | g7715.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 288 | 349 | 8.541 |
| 189 | g7715.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 350 | 419 | 11.721 |
| 203 | g7715.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 420 | 464 | 11.626 |
| 197 | g7715.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 465 | 510 | 14.33 |
| 209 | g7715.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 511 | 556 | 18.728 |
| 206 | g7715.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 557 | 602 | 16.596 |
| 208 | g7715.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 603 | 647 | 14.539 |
| 202 | g7715.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 648 | 692 | 15.72 |
| 198 | g7715.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 693 | 747 | 10.769 |
| 201 | g7715.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 748 | 800 | 15.529 |
| 205 | g7715.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 1379 | 1424 | 18.728 |
| 199 | g7715.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 1425 | 1469 | 13.054 |
| 194 | g7715.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 1470 | 1517 | 16.044 |
| 193 | g7715.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 1518 | 1568 | 13.797 |
| 188 | g7715.t1 | ProSiteProfiles | PS51115 | Laminin IV type A domain profile. | 1589 | 1794 | 25.703 |
| 204 | g7715.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 1757 | 1813 | 6.827 |
| 191 | g7715.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 1814 | 1863 | 15.929 |
| 207 | g7715.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 1864 | 1921 | 10.026 |
| 196 | g7715.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 1922 | 1974 | 14.196 |
| 195 | g7715.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 1975 | 2021 | 13.53 |
| 200 | g7715.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 2022 | 2068 | 18.881 |
| 192 | g7715.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 2069 | 2116 | 10.274 |
| 211 | g7715.t1 | ProSiteProfiles | PS50025 | Laminin G domain profile. | 2682 | 2868 | 23.785 |
| 214 | g7715.t1 | ProSiteProfiles | PS50025 | Laminin G domain profile. | 2881 | 3053 | 38.627 |
| 210 | g7715.t1 | ProSiteProfiles | PS50025 | Laminin G domain profile. | 3060 | 3229 | 35.587 |
| 212 | g7715.t1 | ProSiteProfiles | PS50025 | Laminin G domain profile. | 3355 | 3534 | 35.998 |
| 213 | g7715.t1 | ProSiteProfiles | PS50025 | Laminin G domain profile. | 3540 | 3715 | 30.877 |
| 180 | g7715.t1 | SMART | SM00136 | LamNT_2 | 24 | 286 | 3.0E-134 |
| 162 | g7715.t1 | SMART | SM00180 | lamegf_3 | 288 | 347 | 0.07 |
| 161 | g7715.t1 | SMART | SM00180 | lamegf_3 | 350 | 417 | 1.7E-8 |
| 144 | g7715.t1 | SMART | SM00180 | lamegf_3 | 420 | 462 | 0.014 |
| 158 | g7715.t1 | SMART | SM00180 | lamegf_3 | 465 | 508 | 1.2E-7 |
| 178 | g7715.t1 | SMART | SM00181 | egf_5 | 497 | 542 | 250.0 |
| 156 | g7715.t1 | SMART | SM00180 | lamegf_3 | 511 | 554 | 3.0E-13 |
| 174 | g7715.t1 | SMART | SM00181 | egf_5 | 553 | 588 | 59.0 |
| 152 | g7715.t1 | SMART | SM00180 | lamegf_3 | 557 | 600 | 3.1E-8 |
| 173 | g7715.t1 | SMART | SM00181 | egf_5 | 599 | 633 | 110.0 |
| 154 | g7715.t1 | SMART | SM00180 | lamegf_3 | 603 | 645 | 7.2E-10 |
| 171 | g7715.t1 | SMART | SM00181 | egf_5 | 644 | 678 | 120.0 |
| 160 | g7715.t1 | SMART | SM00180 | lamegf_3 | 648 | 690 | 3.1E-5 |
| 153 | g7715.t1 | SMART | SM00180 | lamegf_3 | 693 | 745 | 4.1E-6 |
| 155 | g7715.t1 | SMART | SM00180 | lamegf_3 | 748 | 798 | 1.5E-8 |
| 165 | g7715.t1 | SMART | SM00180 | lamegf_3 | 801 | 842 | 1.0 |
| 172 | g7715.t1 | SMART | SM00181 | egf_5 | 1378 | 1423 | 94.0 |
| 157 | g7715.t1 | SMART | SM00180 | lamegf_3 | 1379 | 1422 | 1.4E-10 |
| 159 | g7715.t1 | SMART | SM00180 | lamegf_3 | 1425 | 1467 | 6.0E-8 |
| 148 | g7715.t1 | SMART | SM00180 | lamegf_3 | 1470 | 1515 | 3.4E-8 |
| 150 | g7715.t1 | SMART | SM00180 | lamegf_3 | 1518 | 1566 | 3.3E-6 |
| 143 | g7715.t1 | SMART | SM00281 | LamB_3a | 1637 | 1765 | 1.0E-37 |
| 145 | g7715.t1 | SMART | SM00180 | lamegf_3 | 1757 | 1811 | 0.88 |
| 179 | g7715.t1 | SMART | SM00181 | egf_5 | 1761 | 1793 | 130.0 |
| 164 | g7715.t1 | SMART | SM00180 | lamegf_3 | 1814 | 1861 | 2.6E-11 |
| 149 | g7715.t1 | SMART | SM00180 | lamegf_3 | 1864 | 1919 | 2.3E-4 |
| 176 | g7715.t1 | SMART | SM00181 | egf_5 | 1878 | 1920 | 100.0 |
| 163 | g7715.t1 | SMART | SM00180 | lamegf_3 | 1922 | 1972 | 8.2E-10 |
| 175 | g7715.t1 | SMART | SM00181 | egf_5 | 1935 | 1973 | 18.0 |
| 147 | g7715.t1 | SMART | SM00180 | lamegf_3 | 1975 | 2019 | 1.6E-8 |
| 146 | g7715.t1 | SMART | SM00180 | lamegf_3 | 2022 | 2066 | 8.8E-10 |
| 177 | g7715.t1 | SMART | SM00181 | egf_5 | 2023 | 2067 | 190.0 |
| 151 | g7715.t1 | SMART | SM00180 | lamegf_3 | 2069 | 2114 | 7.4E-4 |
| 166 | g7715.t1 | SMART | SM00282 | LamG_3 | 2704 | 2852 | 2.0E-23 |
| 167 | g7715.t1 | SMART | SM00282 | LamG_3 | 2903 | 3036 | 1.3E-26 |
| 170 | g7715.t1 | SMART | SM00282 | LamG_3 | 3080 | 3211 | 4.2E-25 |
| 169 | g7715.t1 | SMART | SM00282 | LamG_3 | 3377 | 3519 | 1.4E-25 |
| 168 | g7715.t1 | SMART | SM00282 | LamG_3 | 3561 | 3697 | 4.7E-28 |
| 72 | g7715.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 288 | 347 | 5.02E-6 |
| 57 | g7715.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 350 | 422 | 5.86E-6 |
| 70 | g7715.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 420 | 467 | 1.76E-5 |
| 67 | g7715.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 465 | 513 | 1.14E-7 |
| 64 | g7715.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 511 | 559 | 1.9E-9 |
| 66 | g7715.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 557 | 605 | 4.46E-8 |
| 69 | g7715.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 603 | 650 | 1.59E-7 |
| 59 | g7715.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 648 | 695 | 2.79E-5 |
| 61 | g7715.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 712 | 750 | 3.07E-5 |
| 65 | g7715.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 748 | 798 | 3.63E-6 |
| 58 | g7715.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 1379 | 1427 | 1.79E-8 |
| 73 | g7715.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 1431 | 1467 | 1.0E-5 |
| 56 | g7715.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 1470 | 1520 | 4.19E-10 |
| 62 | g7715.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 1518 | 1566 | 2.46E-5 |
| 74 | g7715.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 1777 | 1816 | 1.7E-5 |
| 60 | g7715.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 1814 | 1866 | 5.02E-8 |
| 68 | g7715.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 1872 | 1924 | 1.81E-7 |
| 63 | g7715.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 1922 | 1975 | 3.91E-10 |
| 71 | g7715.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 1975 | 2024 | 2.76E-5 |
| 55 | g7715.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 2022 | 2071 | 3.07E-6 |
| 53 | g7715.t1 | SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 2682 | 2864 | 2.47E-24 |
| 51 | g7715.t1 | SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 2882 | 3056 | 3.17E-36 |
| 52 | g7715.t1 | SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 3063 | 3231 | 7.27E-29 |
| 54 | g7715.t1 | SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 3339 | 3526 | 2.61E-28 |
| 50 | g7715.t1 | SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 3539 | 3715 | 4.19E-30 |
| 75 | g7715.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 27 | - |
| 142 | g7715.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 26 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0007155 | cell adhesion | BP |
| GO:0030334 | regulation of cell migration | BP |
| GO:0045995 | regulation of embryonic development | BP |
| GO:0005102 | signaling receptor binding | MF |
| GO:0030155 | regulation of cell adhesion | BP |
KEGG
Orthology
- This transcript has been annotated with K06240 (laminin, alpha 3/5)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
