General information for g7717.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial.
Parent gene
- The parent gene g7717 is located on chr_2: 25444396..25445177 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7717 | g7717.t2 | isoform | g7717.t2 | 25443723 | 25444324 |
| chr_2 | g7717 | g7717.t2 | exon | g7717.t2.exon1 | 25443723 | 25444324 |
| chr_2 | g7717 | g7717.t2 | TTS | g7717.t2 | 25443730 | 25443730 |
| chr_2 | g7717 | g7717.t2 | cds | g7717.t2.CDS1 | 25443941 | 25444171 |
| chr_2 | g7717 | g7717.t2 | TSS | g7717.t2 | 25445263 | 25445263 |
Sequences
>g7717.t2 Gene=g7717 Length=602
ACTGAGGAAAAGGGTAAAGCACAATATCTTCAATCAGTTGATGATCGATCAAAACTTGAT
GGCCTCTATGAATGCATTTTATGTGCATGTTGTTCAACATCGTGTCCTAGCTATTGGTGG
AATTCAGAAAAATATTTGGGACCAGCTGTACTTATGCAAGCATATAGATGGATTATTGAT
TCACGTGATGAATCGACAAAGGCTCGTTTGGATAAATTGAGAGATCCATTCAGTGTATAT
CGTTGTCATACAATTATGAATTGCTCTCGTACATGTCCAAAAGGACTTAATCCTGGAAAA
GCAATTGCAGAAATCAAAAAGCTTCTCGGTGGTCTGGCGACAAAAGATGCTCCTGGCTTA
GAAACAGCAAAGTTACACAAGTAAAATGTGAAAGTGTATTAAATTTGAGTAAATTAAAAA
TCCAAATTTTAATTTCATTATTGTTTTCCTATATTGTACATTATTTAGAGACAATAGGCT
TCATTGCATATTAATTATGATTTTGAGATAAAAGCCATATTATTGTATTTCTTCTGTGAA
GTCCCATTCAAAATAAGTATTTAATAAATCTGAAATATGACATCTTCCACCATTCAATAT
TT
>g7717.t2 Gene=g7717 Length=76
MQAYRWIIDSRDESTKARLDKLRDPFSVYRCHTIMNCSRTCPKGLNPGKAIAEIKKLLGG
LATKDAPGLETAKLHK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g7717.t2 | Gene3D | G3DSA:1.10.1060.10 | - | 1 | 74 | 0 |
| 1 | g7717.t2 | PANTHER | PTHR11921 | SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN | 1 | 60 | 0 |
| 2 | g7717.t2 | SUPERFAMILY | SSF46548 | alpha-helical ferredoxin | 1 | 57 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0051536 | iron-sulfur cluster binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
