Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytosolic non-specific dipeptidase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7720 g7720.t3 TTS g7720.t3 25453186 25453186
chr_2 g7720 g7720.t3 isoform g7720.t3 25453263 25454471
chr_2 g7720 g7720.t3 exon g7720.t3.exon1 25453263 25453447
chr_2 g7720 g7720.t3 cds g7720.t3.CDS1 25453263 25453447
chr_2 g7720 g7720.t3 exon g7720.t3.exon2 25453508 25454471
chr_2 g7720 g7720.t3 cds g7720.t3.CDS2 25453508 25454327
chr_2 g7720 g7720.t3 TSS g7720.t3 25455351 25455351

Sequences

>g7720.t3 Gene=g7720 Length=1149
ACTGTAGTAGTTTATGGTCATCTTGATGTGCAACCAGCAGAATATTCTGACGGTTGGGAA
ACTGAACCATTTAAATTAACATTACGCGATGGAAAATTGTATGGTCGTGGAGCGAGTGAT
GATAAAGGACCAATTATCGCATGGATGAACGCGATTGAAGCATATCACAATATAGGAACT
GAATTACCAATAAATTTGAAATTTGTTCTTGAAGCAATGGAAGAAAGTGGAAGTCTTGGA
TTGAATAAAATGCTCATATCAAGAAAAGACTGGTTTGATGATGTCGATTATATTTGCATA
ACTGATACTGCTTGGTTAGGAAATGAACAACCTTGCATCTCACATGGATTAAGAGGTTTA
AGTTACTTTAGAATTGAAGTTGAATGTGCATCAAAAGACTTGCATTCAGGGGTTTTTGGT
GGAGTTATTCATGAAGCACTTACTGATTTAATCCATTTAATGTCTCAACTAGTAGATTGT
AATGGAAAAATTTTAATACCTGGCATTTATGACGATGTTGAACCAATAACGCCAAATGAA
AATGAAATTTATGAGAAAATAACTTTTGATGTTGATGCTTTCCACAAGAGTTTAGGTACT
CCCGGAAAATTGTTATATGACACTAAAATAGCATTATTACAACATAGGTGGCGTTTTCCT
TGCCTTTCATTACATGGAATTGAAGGTGCTTTTCATGAGTCAGGTCAAAAAACTGTGATT
CCAAAAAAAGTTATTGGAAAGTTTTCAATTCGTACTGTTCCAAATCAAAGCACTGAAAAA
ATTGAAAAACTTGTTGTAGACTATATAAATCAAAAATTCAAAGAATGGGGAAGTCCAAAT
AAAATGAAATGTTTTATGTCACATGGAGCTAAACCTTTTAATGAAAATCCATTTCACGAA
AATTACTTAGCTGCAACAAAGGCTATTAAACATGTTTACAATTTGGAACCTGATATTATA
AGAGGTGGTTCAACTGTGCCTGTTACTCTTTATTTTCAAGAAGTATCAGGAAGAAATGTA
CTTTTGCTGCCTCTTGGATGTAGTGATGATGGAGCTCACTCACAAAATGAGAAAATTAAT
TTAAGAAATTTTTTTGATGGAAGCAAAGTTCTTGCTTCCTACATTTATGAAGTCTCACAA
ATCGAATGA

>g7720.t3 Gene=g7720 Length=334
MNAIEAYHNIGTELPINLKFVLEAMEESGSLGLNKMLISRKDWFDDVDYICITDTAWLGN
EQPCISHGLRGLSYFRIEVECASKDLHSGVFGGVIHEALTDLIHLMSQLVDCNGKILIPG
IYDDVEPITPNENEIYEKITFDVDAFHKSLGTPGKLLYDTKIALLQHRWRFPCLSLHGIE
GAFHESGQKTVIPKKVIGKFSIRTVPNQSTEKIEKLVVDYINQKFKEWGSPNKMKCFMSH
GAKPFNENPFHENYLAATKAIKHVYNLEPDIIRGGSTVPVTLYFQEVSGRNVLLLPLGCS
DDGAHSQNEKINLRNFFDGSKVLASYIYEVSQIE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g7720.t3 Gene3D G3DSA:3.30.70.360 - 70 228 0
7 g7720.t3 Gene3D G3DSA:3.40.630.10 Zn peptidases 229 334 0
3 g7720.t3 PANTHER PTHR43270 BETA-ALA-HIS DIPEPTIDASE 1 333 0
4 g7720.t3 PANTHER PTHR43270:SF11 CYTOSOLIC NON-SPECIFIC DIPEPTIDASE 1 333 0
2 g7720.t3 Pfam PF01546 Peptidase family M20/M25/M40 2 328 0
1 g7720.t3 Pfam PF07687 Peptidase dimerisation domain 68 228 0
5 g7720.t3 SUPERFAMILY SSF53187 Zn-dependent exopeptidases 2 331 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016787 hydrolase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed