General information for g7720.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Cytosolic non-specific dipeptidase.
Parent gene
- The parent gene g7720 is located on chr_2: 25454486..25455286 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7720 | g7720.t4 | TTS | g7720.t4 | 25453186 | 25453186 |
| chr_2 | g7720 | g7720.t4 | isoform | g7720.t4 | 25453508 | 25454471 |
| chr_2 | g7720 | g7720.t4 | exon | g7720.t4.exon1 | 25453508 | 25454471 |
| chr_2 | g7720 | g7720.t4 | cds | g7720.t4.CDS1 | 25453509 | 25454327 |
| chr_2 | g7720 | g7720.t4 | TSS | g7720.t4 | 25455351 | 25455351 |
Sequences
>g7720.t4 Gene=g7720 Length=964
ACTGTAGTAGTTTATGGTCATCTTGATGTGCAACCAGCAGAATATTCTGACGGTTGGGAA
ACTGAACCATTTAAATTAACATTACGCGATGGAAAATTGTATGGTCGTGGAGCGAGTGAT
GATAAAGGACCAATTATCGCATGGATGAACGCGATTGAAGCATATCACAATATAGGAACT
GAATTACCAATAAATTTGAAATTTGTTCTTGAAGCAATGGAAGAAAGTGGAAGTCTTGGA
TTGAATAAAATGCTCATATCAAGAAAAGACTGGTTTGATGATGTCGATTATATTTGCATA
ACTGATACTGCTTGGTTAGGAAATGAACAACCTTGCATCTCACATGGATTAAGAGGTTTA
AGTTACTTTAGAATTGAAGTTGAATGTGCATCAAAAGACTTGCATTCAGGGGTTTTTGGT
GGAGTTATTCATGAAGCACTTACTGATTTAATCCATTTAATGTCTCAACTAGTAGATTGT
AATGGAAAAATTTTAATACCTGGCATTTATGACGATGTTGAACCAATAACGCCAAATGAA
AATGAAATTTATGAGAAAATAACTTTTGATGTTGATGCTTTCCACAAGAGTTTAGGTACT
CCCGGAAAATTGTTATATGACACTAAAATAGCATTATTACAACATAGGTGGCGTTTTCCT
TGCCTTTCATTACATGGAATTGAAGGTGCTTTTCATGAGTCAGGTCAAAAAACTGTGATT
CCAAAAAAAGTTATTGGAAAGTTTTCAATTCGTACTGTTCCAAATCAAAGCACTGAAAAA
ATTGAAAAACTTGTTGTAGACTATATAAATCAAAAATTCAAAGAATGGGGAAGTCCAAAT
AAAATGAAATGTTTTATGTCACATGGAGCTAAACCTTTTAATGAAAATCCATTTCACGAA
AATTACTTAGCTGCAACAAAGGCTATTAAACATGTTTACAATTTGGAACCTGATATTATA
AGAG
>g7720.t4 Gene=g7720 Length=273
MNAIEAYHNIGTELPINLKFVLEAMEESGSLGLNKMLISRKDWFDDVDYICITDTAWLGN
EQPCISHGLRGLSYFRIEVECASKDLHSGVFGGVIHEALTDLIHLMSQLVDCNGKILIPG
IYDDVEPITPNENEIYEKITFDVDAFHKSLGTPGKLLYDTKIALLQHRWRFPCLSLHGIE
GAFHESGQKTVIPKKVIGKFSIRTVPNQSTEKIEKLVVDYINQKFKEWGSPNKMKCFMSH
GAKPFNENPFHENYLAATKAIKHVYNLEPDIIR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7720.t4 | Gene3D | G3DSA:3.30.70.360 | - | 70 | 244 | 0 |
| 2 | g7720.t4 | PANTHER | PTHR43270 | BETA-ALA-HIS DIPEPTIDASE | 1 | 273 | 0 |
| 3 | g7720.t4 | PANTHER | PTHR43270:SF11 | CYTOSOLIC NON-SPECIFIC DIPEPTIDASE | 1 | 273 | 0 |
| 1 | g7720.t4 | Pfam | PF07687 | Peptidase dimerisation domain | 68 | 228 | 0 |
| 4 | g7720.t4 | SUPERFAMILY | SSF53187 | Zn-dependent exopeptidases | 1 | 101 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed