General information for g7736.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7736 is located on chr_2: 25616213..25621876 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7736 | g7736.t4 | TSS | g7736.t4 | 25615178 | 25615178 |
| chr_2 | g7736 | g7736.t4 | isoform | g7736.t4 | 25615208 | 25616700 |
| chr_2 | g7736 | g7736.t4 | exon | g7736.t4.exon1 | 25615208 | 25615500 |
| chr_2 | g7736 | g7736.t4 | cds | g7736.t4.CDS1 | 25615208 | 25615500 |
| chr_2 | g7736 | g7736.t4 | exon | g7736.t4.exon2 | 25615563 | 25615609 |
| chr_2 | g7736 | g7736.t4 | cds | g7736.t4.CDS2 | 25615563 | 25615609 |
| chr_2 | g7736 | g7736.t4 | exon | g7736.t4.exon3 | 25615746 | 25615800 |
| chr_2 | g7736 | g7736.t4 | cds | g7736.t4.CDS3 | 25615746 | 25615747 |
| chr_2 | g7736 | g7736.t4 | exon | g7736.t4.exon4 | 25616182 | 25616700 |
| chr_2 | g7736 | g7736.t4 | TTS | g7736.t4 | 25616967 | 25616967 |
Sequences
>g7736.t4 Gene=g7736 Length=914
ATGGAATTTTGTGACTTAGAAGATAAATACGGTCAAAAATTTATTGAGGGTAAAAATTTT
AAAAGTATTGAAATTAAAAATGGCAACACCAAGTGTGTAATGGTGAAAAAATACTGGAGT
GAATATCTGGAAGACATGAAAAATTTTGAAGTTTTTGAAGATGATGTGTGGGTGATTTCT
TATCCTAAATGTGGCACGACATGGACACAAGAGATGACATGGCTACTCAATAAAGATTTG
GATTATGATGAAGCAATGCAAAATAAATTAAATTTTAGGTTTCCATACATTGAGTTTGGT
GGAATTTCTGATGAAATATCTATAAATACAATTGATAAATAACAATGCAGCTTATACATT
CACTTTGGCTGACTGGCTGGCAGGCACACGGCTGAATAATTTATATAACAAGAAATCCGA
AAGATGCAGTAGTATCATATTTTCATCATTATCGAAATATCATTGGTTATTTGGGATCAA
GAGACGAATTTTTTGATTTTTTTTTGAATGATAAACTTGTGTACTCTCCTTTTAGTTCAC
ATGTCATTGAATTTTGGAAAATTTCTAAAGAAAACTCAAACGTTTTGTTTCTTTTTTATG
AGAATTTAAAGAAAAATCTTGATAATGAAGTGAAAAAAGTCATGAAATTTTTAAACAAAA
ATTACACACAGGATCAAGTTGATAAATTATGTGAACATCTTTCATTTGATTCAATGAAGA
AAAATGTCTCAATTAATTGGAAACCAAACACACTTCCACGAGAAGTTGAAAATCAAACAG
AAGAGAAATTTGAGTTTATTAGAAAAGGAATTGTTGGCAGTCATAAGAAAGAAATGACTG
AGAATCAAATTAGTAGATTTAATGACTATTTGAATAGATTTTCTGATTATTCTGAACTTT
TGGAAAATTTTTGA
>g7736.t4 Gene=g7736 Length=113
MEFCDLEDKYGQKFIEGKNFKSIEIKNGNTKCVMVKKYWSEYLEDMKNFEVFEDDVWVIS
YPKCGTTWTQEMTWLLNKDLDYDEAMQNKLNFRFPYIEFGGISDEISINTIDK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7736.t4 | Gene3D | G3DSA:3.40.50.300 | - | 2 | 113 | 0 |
| 2 | g7736.t4 | PANTHER | PTHR11783 | SULFOTRANSFERASE SULT | 20 | 103 | 0 |
| 3 | g7736.t4 | PANTHER | PTHR11783:SF180 | GH11818P-RELATED | 20 | 103 | 0 |
| 1 | g7736.t4 | Pfam | PF00685 | Sulfotransferase domain | 54 | 99 | 0 |
| 4 | g7736.t4 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 32 | 99 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008146 | sulfotransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
