General information for g7736.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Sulfotransferase 1C2.
Parent gene
- The parent gene g7736 is located on chr_2: 25616213..25621876 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7736 | g7736.t6 | TSS | g7736.t6 | 25615178 | 25615178 |
| chr_2 | g7736 | g7736.t6 | isoform | g7736.t6 | 25615208 | 25616700 |
| chr_2 | g7736 | g7736.t6 | exon | g7736.t6.exon1 | 25615208 | 25615695 |
| chr_2 | g7736 | g7736.t6 | cds | g7736.t6.CDS1 | 25615528 | 25615695 |
| chr_2 | g7736 | g7736.t6 | exon | g7736.t6.exon2 | 25616182 | 25616700 |
| chr_2 | g7736 | g7736.t6 | cds | g7736.t6.CDS2 | 25616182 | 25616700 |
| chr_2 | g7736 | g7736.t6 | TTS | g7736.t6 | 25616967 | 25616967 |
Sequences
>g7736.t6 Gene=g7736 Length=1007
ATGGAATTTTGTGACTTAGAAGATAAATACGGTCAAAAATTTATTGAGGGTAAAAATTTT
AAAAGTATTGAAATTAAAAATGGCAACACCAAGTGTGTAATGGTGAAAAAATACTGGAGT
GAATATCTGGAAGACATGAAAAATTTTGAAGTTTTTGAAGATGATGTGTGGGTGATTTCT
TATCCTAAATGTGGCACGACATGGACACAAGAGATGACATGGCTACTCAATAAAGATTTG
GATTATGATGAAGCAATGCAAAATAAATTAAATTTTAGGTTTCCATACATTGAGTGCGTA
ATGAATGAATTTTTTTGCAAATGCATTTTTCTTTGACCTACTTTCATTTTCTCAGGTTTG
GTGGAATTTCTGATGAAATATCTATAAATACAATTGATAAATGTAATAAACTTTCACGTC
CACGACACATTAAGTCACATTTACCGGTTTTTTTGCTACCTGAACAATTGTGGACAGTCA
AACCAAAGATAATTTATATAACAAGAAATCCGAAAGATGCAGTAGTATCATATTTTCATC
ATTATCGAAATATCATTGGTTATTTGGGATCAAGAGACGAATTTTTTGATTTTTTTTTGA
ATGATAAACTTGTGTACTCTCCTTTTAGTTCACATGTCATTGAATTTTGGAAAATTTCTA
AAGAAAACTCAAACGTTTTGTTTCTTTTTTATGAGAATTTAAAGAAAAATCTTGATAATG
AAGTGAAAAAAGTCATGAAATTTTTAAACAAAAATTACACACAGGATCAAGTTGATAAAT
TATGTGAACATCTTTCATTTGATTCAATGAAGAAAAATGTCTCAATTAATTGGAAACCAA
ACACACTTCCACGAGAAGTTGAAAATCAAACAGAAGAGAAATTTGAGTTTATTAGAAAAG
GAATTGTTGGCAGTCATAAGAAAGAAATGACTGAGAATCAAATTAGTAGATTTAATGACT
ATTTGAATAGATTTTCTGATTATTCTGAACTTTTGGAAAATTTTTGA
>g7736.t6 Gene=g7736 Length=228
MHFSLTYFHFLRFGGISDEISINTIDKCNKLSRPRHIKSHLPVFLLPEQLWTVKPKIIYI
TRNPKDAVVSYFHHYRNIIGYLGSRDEFFDFFLNDKLVYSPFSSHVIEFWKISKENSNVL
FLFYENLKKNLDNEVKKVMKFLNKNYTQDQVDKLCEHLSFDSMKKNVSINWKPNTLPREV
ENQTEEKFEFIRKGIVGSHKKEMTENQISRFNDYLNRFSDYSELLENF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g7736.t6 | Coils | Coil | Coil | 124 | 144 | - |
| 5 | g7736.t6 | Gene3D | G3DSA:3.40.50.300 | - | 4 | 224 | 2.7E-60 |
| 2 | g7736.t6 | PANTHER | PTHR11783 | SULFOTRANSFERASE SULT | 8 | 218 | 3.8E-67 |
| 3 | g7736.t6 | PANTHER | PTHR11783:SF180 | GH11818P-RELATED | 8 | 218 | 3.8E-67 |
| 1 | g7736.t6 | Pfam | PF00685 | Sulfotransferase domain | 24 | 215 | 1.7E-49 |
| 4 | g7736.t6 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 21 | 218 | 2.49E-56 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008146 | sulfotransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
