Gene loci information

Transcript annotation

  • This transcript has been annotated as Fizzy-related protein-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7740 g7740.t1 TSS g7740.t1 25624163 25624163
chr_2 g7740 g7740.t1 isoform g7740.t1 25624554 25629026
chr_2 g7740 g7740.t1 exon g7740.t1.exon1 25624554 25624666
chr_2 g7740 g7740.t1 cds g7740.t1.CDS1 25624554 25624666
chr_2 g7740 g7740.t1 exon g7740.t1.exon2 25624797 25625046
chr_2 g7740 g7740.t1 cds g7740.t1.CDS2 25624797 25625046
chr_2 g7740 g7740.t1 exon g7740.t1.exon3 25627570 25627938
chr_2 g7740 g7740.t1 cds g7740.t1.CDS3 25627570 25627938
chr_2 g7740 g7740.t1 exon g7740.t1.exon4 25628206 25628386
chr_2 g7740 g7740.t1 cds g7740.t1.CDS4 25628206 25628386
chr_2 g7740 g7740.t1 exon g7740.t1.exon5 25628456 25628692
chr_2 g7740 g7740.t1 cds g7740.t1.CDS5 25628456 25628692
chr_2 g7740 g7740.t1 exon g7740.t1.exon6 25628752 25629026
chr_2 g7740 g7740.t1 cds g7740.t1.CDS6 25628752 25629026
chr_2 g7740 g7740.t1 TTS g7740.t1 25629499 25629499

Sequences

>g7740.t1 Gene=g7740 Length=1425
ATGTTTAGTCCGGAATATGAAAAACGTTTGCTTAAACATTGCAGTCCAGCCGCTAGGCGT
TTATTCGCTACACCTGAGTCATCGTCACCTTCAGACCGATTTATTCCATGCAGAGCAAAC
AACAACTGGGAAACGAATTATTCAACATTGACGAAATCAAGTGAGAATTCATCACAATCA
AAAAAGCAGCGAGAATGTGGTGAATCTGCTCGTGATAGTCTTGCATATTCATGTCTATTG
AAGAATGAATTACTAGGCGCAACTATTCAAGATATTAAGAATATATCAGACGAAAATAAA
ATTGGATGTCTATCGAATAGTAATAATCGTGGTTTATTCAAATATCAATCACCAGCAAGA
CAGGACAACAATGATCCATGTCCATATTCACTTTCGCCGGTATCACTGAAAAGTCAAAAA
CTGTTACGATCACCTCGAAAGGCAACAAGAAAAATTTCAAGAATTCCTTTTAAAGTGCTT
GATGCACCAGAATTACAAGATGATTTTTATTTAAATCTCGTCGATTGGTCAGCACAAAAC
GTACTAGCTGTAGGTCTTGGTAGTTGCGTCTATTTATGGTCAGCCTGTACAAGTCAAGTT
ACTCGCTTATGTGATTTGAGTAACGATGGAAATACAGTGACTTCAGTTTCGTGGAGCGAA
CGTGGTCATCAGTTGGCAGTTGGAACACATCACGGCTATGTAACGGTCTGGGATGTTCAA
GCAAGCAAACAGGTGAATAAACTTACTGGACATTCTGCACGCGTGGGTGCGTTAGCGTGG
AACGGTGATATTCTTTCAAGTGGATCAAGGGATCGATTGATAATGCAACGCGATGTGAGA
ACACCGCCACAGACTTGTGAGAGACGCTTAGAAGGCCATCGTCAAGAAGTTTGTGGACTC
AAATGGTCTCCAGACAATCAATATTTAGCTAGTGGTGGAAATGATAATCGTCTTTATGTA
TGGAATCAACATGCACTCACACCTGTGCAATCTTATACTGAACATATGGCAGCTGTTAAG
GCAATTGCTTGGTCTCCTCATCATCACGGTCTCTTAGTATCTGGTGGTGGAACAGCAGAT
CGATGTATTAGATTTTGGAATACACTCACTGGACAGCCTATGCAATGTGTTGACACAGGA
TCACAAGTTTGTAACTTAGCGTGGTCAAAACATTCATCAGAGTTGGTTTCAACTCATGGC
TATTCACAAAATCAAATTCTTGTATGGAAATATCCATCACTCACTCAAGTCGCCAAATTG
ACAGGACATTCTTATCGTGTACTCTATTTGGCTCTTAGTCCCGACGGTGAAGCGATCGTG
ACCGGTGCCGGCGATGAAACATTAAGATTTTGGAATGTTTTTAGCAAAGCGCGGAGTCAA
AAAGAAAATAAGAGCGTCCTTAATTTATATGCAAACATCAGATAA

>g7740.t1 Gene=g7740 Length=474
MFSPEYEKRLLKHCSPAARRLFATPESSSPSDRFIPCRANNNWETNYSTLTKSSENSSQS
KKQRECGESARDSLAYSCLLKNELLGATIQDIKNISDENKIGCLSNSNNRGLFKYQSPAR
QDNNDPCPYSLSPVSLKSQKLLRSPRKATRKISRIPFKVLDAPELQDDFYLNLVDWSAQN
VLAVGLGSCVYLWSACTSQVTRLCDLSNDGNTVTSVSWSERGHQLAVGTHHGYVTVWDVQ
ASKQVNKLTGHSARVGALAWNGDILSSGSRDRLIMQRDVRTPPQTCERRLEGHRQEVCGL
KWSPDNQYLASGGNDNRLYVWNQHALTPVQSYTEHMAAVKAIAWSPHHHGLLVSGGGTAD
RCIRFWNTLTGQPMQCVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVWKYPSLTQVAKL
TGHSYRVLYLALSPDGEAIVTGAGDETLRFWNVFSKARSQKENKSVLNLYANIR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g7740.t1 CDD cd00200 WD40 174 452 2.38078E-43
8 g7740.t1 Gene3D G3DSA:2.130.10.10 - 153 455 2.3E-132
5 g7740.t1 PANTHER PTHR19918 CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 28 474 1.2E-227
6 g7740.t1 PANTHER PTHR19918:SF34 FIZZY/CELL DIVISION CYCLE 20 RELATED 1 (DROSOPHILA) 28 474 1.2E-227
4 g7740.t1 Pfam PF12894 Anaphase-promoting complex subunit 4 WD40 domain 206 261 8.4E-7
2 g7740.t1 Pfam PF00400 WD domain, G-beta repeat 285 322 2.7E-8
1 g7740.t1 Pfam PF00400 WD domain, G-beta repeat 328 367 6.1E-4
3 g7740.t1 Pfam PF00400 WD domain, G-beta repeat 417 452 0.0024
10 g7740.t1 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 354 368 -
11 g7740.t1 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 439 453 -
19 g7740.t1 ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 206 461 39.944
21 g7740.t1 ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 206 247 11.912
22 g7740.t1 ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 290 322 15.388
20 g7740.t1 ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 420 461 14.519
15 g7740.t1 SMART SM00320 WD40_4 153 194 410.0
12 g7740.t1 SMART SM00320 WD40_4 199 238 0.021
18 g7740.t1 SMART SM00320 WD40_4 241 278 0.061
17 g7740.t1 SMART SM00320 WD40_4 283 322 1.6E-10
16 g7740.t1 SMART SM00320 WD40_4 325 367 9.9E-4
14 g7740.t1 SMART SM00320 WD40_4 370 410 73.0
13 g7740.t1 SMART SM00320 WD40_4 413 452 1.1E-6
7 g7740.t1 SUPERFAMILY SSF50978 WD40 repeat-like 149 453 9.16E-65

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:1904668 positive regulation of ubiquitin protein ligase activity BP
GO:0097027 ubiquitin-protein transferase activator activity MF
GO:0010997 anaphase-promoting complex binding MF
GO:0005515 protein binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values