General information for g7741.t13
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Eukaryotic translation initiation factor 4E1.
Parent gene
- The parent gene g7741 is located on chr_2: 25630788..25637153 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7741 | g7741.t13 | TSS | g7741.t13 | 25629566 | 25629566 |
| chr_2 | g7741 | g7741.t13 | isoform | g7741.t13 | 25630245 | 25631538 |
| chr_2 | g7741 | g7741.t13 | exon | g7741.t13.exon1 | 25630245 | 25630544 |
| chr_2 | g7741 | g7741.t13 | cds | g7741.t13.CDS1 | 25630361 | 25630544 |
| chr_2 | g7741 | g7741.t13 | exon | g7741.t13.exon2 | 25630625 | 25631118 |
| chr_2 | g7741 | g7741.t13 | cds | g7741.t13.CDS2 | 25630625 | 25630788 |
| chr_2 | g7741 | g7741.t13 | exon | g7741.t13.exon3 | 25631376 | 25631538 |
| chr_2 | g7741 | g7741.t13 | TTS | g7741.t13 | 25631742 | 25631742 |
Sequences
>g7741.t13 Gene=g7741 Length=957
AAGTTTCAACGTTCCAGACTGTTGAAGATTTCTGGAGTTTGTTTACTCACATCAAGCAAC
CGAGTGAAGTTAAAATAGGCAGCGATTACTCTCTTTTCAAAACAGACATTCGTCCAATGT
GGGAAGATAAGGCTAACAAAAATGGAGGTCGTTGGATGTTGACATTAAATCGAAATCAAC
GACCAGAATTAGATCGCTACTGGATCGACACTGTTTTGTGTTTAATTGGTGAGGCATTTG
ATAGCTTCGAGGATATTTGTGGGGCTGTTGTTAACATTCGTTCAAAAGGAGATAAAATAG
GTGTCTGGACGAGTAACAGCAATAATAAAGAAGCAGTTATGGAAATTGGTAGGAAATTGA
AAGAAGGACTTAATTTGCCAGATCGTATCAAAATTCAATATCAGACACATTCGGATTCAA
TGGTTAAGAATTCATCAAACGTAAAGTCTCTCTATGAGATCTAAACAAATTTGGAGGATA
ATCAATATTTGATGAAAGATAATTTATTTGAATTATGATTCTTTCTATACTTTTTTTTGA
GCAGAATTTACAAGTTTACAATATTTCATATAATTGTTTTGCAATCTATGTTTACTGCTT
ATTACCATTTGAAATGAGAAAACTTTTAGCCACATCATCATTATAGATTGATTCTTAATT
TTTTTCCTTTAATTTTTCTTATGTATGTCAACCTTTTTTATTTTGTTGAATTGAATTTAT
TGAAGAAACTGAAATATGTCTCATCTTATCTCTCGACTATAAAAAATATTATGAATGAAT
AAAACCGCTTAGATTGCATTTCATTATTTTTTGTGTAAAGAGATGTAAGAAGAAATAAGA
TGATTGGGATTGAAAAAAGAATTTTTCTCTGTCTCGACCATTGAGCACCATCATCGATTT
GTTCCCAATGTGTTTCTCTAATATGTTTTCCTTCATCTGTGCTAATCCATGGTGTAC
>g7741.t13 Gene=g7741 Length=115
MWEDKANKNGGRWMLTLNRNQRPELDRYWIDTVLCLIGEAFDSFEDICGAVVNIRSKGDK
IGVWTSNSNNKEAVMEIGRKLKEGLNLPDRIKIQYQTHSDSMVKNSSNVKSLYEI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7741.t13 | Gene3D | G3DSA:3.30.760.10 | RNA Cap | 1 | 115 | 0 |
| 2 | g7741.t13 | PANTHER | PTHR11960:SF3 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E TYPE 1B | 1 | 111 | 0 |
| 3 | g7741.t13 | PANTHER | PTHR11960 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED | 1 | 111 | 0 |
| 1 | g7741.t13 | Pfam | PF01652 | Eukaryotic initiation factor 4E | 1 | 95 | 0 |
| 4 | g7741.t13 | SUPERFAMILY | SSF55418 | eIF4e-like | 1 | 110 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006413 | translational initiation | BP |
| GO:0003743 | translation initiation factor activity | MF |
| GO:0003723 | RNA binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
