General information for g7759.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Ubiquitin-conjugating enzyme E2 H.
Parent gene
- The parent gene g7759 is located on chr_2: 25835219..25836750 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7759 | g7759.t4 | TSS | g7759.t4 | 25832663 | 25832663 |
| chr_2 | g7759 | g7759.t4 | isoform | g7759.t4 | 25832889 | 25836750 |
| chr_2 | g7759 | g7759.t4 | exon | g7759.t4.exon1 | 25832889 | 25832894 |
| chr_2 | g7759 | g7759.t4 | exon | g7759.t4.exon2 | 25834545 | 25834666 |
| chr_2 | g7759 | g7759.t4 | cds | g7759.t4.CDS1 | 25834595 | 25834666 |
| chr_2 | g7759 | g7759.t4 | exon | g7759.t4.exon3 | 25834737 | 25835022 |
| chr_2 | g7759 | g7759.t4 | cds | g7759.t4.CDS2 | 25834737 | 25835022 |
| chr_2 | g7759 | g7759.t4 | exon | g7759.t4.exon4 | 25835086 | 25835154 |
| chr_2 | g7759 | g7759.t4 | cds | g7759.t4.CDS3 | 25835086 | 25835154 |
| chr_2 | g7759 | g7759.t4 | exon | g7759.t4.exon5 | 25835224 | 25836750 |
| chr_2 | g7759 | g7759.t4 | cds | g7759.t4.CDS4 | 25835224 | 25835345 |
| chr_2 | g7759 | g7759.t4 | TTS | g7759.t4 | 25837343 | 25837343 |
Sequences
>g7759.t4 Gene=g7759 Length=2010
GAGCGAAAAACCATTTTAAAAGAAAATTATCAACTAAATAATTGAGTGAATAAGAAATGA
GTAGTCCAGTGCAGGGGAAGCGTCGTGTGGACACAGATTTGATCAAATTAATTGAGTCGA
AGCATGAGGTCACCATTCTGGGCGGTCTCAATGAGTTTTGTGTCAAATTTTATGGGCCAA
AAGGGACTCCATATGAGAATGGTGTGTGGAAAATCCGCGTTCATCTGCCCGAGCACTACC
CTTTTAAATCACCAAGCATTGGGTTCATGAATAAAGTCTACCATCCAAATATTGATGAAG
TCAGCGGTACTGTCTGCTTAGATGTAATCAATCAAAGCTGGACTGCCTTGTACGATCTGT
CCAATATTTTTGAATCATTTTTGCCACAACTTCTAACGTATCCAAATCCAGTCGATCCCC
TTAATGGTGATGCAGCCTCGTTATATTTGCATAAGCCAGAAGAATATAAAAAGAAAGTAG
CAGATTATGTTCGTCGTTTTGCCACTGAAGAAGCACTACGCGAAACAGAAAAGAAAGAGG
ACAGCTCAGATTCAGAGATATCAGATTTTAGTGATGAAGATGAAGCAAAGGATATGGAAC
TATGATTGATCTCTTCTAATTCAACAAATGTGGTTTGCACATAAAAATATTTTTTTAAAT
TTAAATTAAAACAAAAAAGCGAATTGCGATATTTTCTTTGCATTGTAAGTTTAGATTTTT
TGGATTTCTTTCAATTTAAATTTTAAATTATTGAGAAAAAAGTTTAACGGTCTATCTTCA
TCTTCAAAACAATTTAAAGACAGAGTTGTTCGTTATATTTTAAATTTTATAGCAGTTTAA
ATTTAAAACTTTTTCGTTCGTTTTTTATTTACATTTATCAAAACCGTTATTTTTGAAATT
TCAAACAAAATAATGAATATGAATTTTTCTCAAATTTTAAATTCGAATATTATGAAAAAA
ATATCACAAAAACTTTTTTTTGAAAAATATTTTTCTAATAATGAACAACTCTGGTTTTAA
AATTAAAGTTGATGTTTAATCGCTCATATTTTAATTTGTCTCTCTTCTCAGCTATCTATC
AATAAAATTTTCCTCTCTCTTTCCTCGTCTCTTCTTCTCCTTCTTGTTCTTGAGAATCGA
TTTAATCAAAGTAGAAAATGTGTTAAATGCGGAAAAATATTAATAATGCTTGCATAAAAA
TTTTAAAATATATATTAAAATTGGCTGGAAATTAATAAGAAGTAGATGTGTAATGTTTAA
ATGGATTTAGAGAGAAGTTAATGAAAAAAATTGAAGATAGCCCTGCAATTTCAAATCGTA
ATCTTTTCCAAGTTAACACAACTTGTATCATCACATATTCACTTTCAATATCTGTCCCAA
TTTCTCTCTATCTTTTACGTGATTGATTTTTAACATAAGTTTTTTCTTCTAAACTAAAAA
CGATTTTTGCCATCAAATCATAATTTTAATTCATGTTACCACAGACACAAGAATAACACG
ATATAACACAGTGCAGATAGAAGAAATTCTTTTTTAAAAATATACACACACCAATAATAA
AAGTTAAATCTCATTCAGAACCAAATAAAAAATACAATAAATAAAACAGATCAAAAAAGT
GAAATTTAAACTTTAATAAACAAAAGAAAAAGTGAATATTTTTCCACTCACAATGAAATA
TAATAACATAAAAAGAAATAAAACAAGAAGTTAAGTAATATACGTTTGTAGTTCCAAAGT
AGCAATTTTGACGATGATTGTTATGCAGTTACAGAATTGAAGTAAAGCAAAAGCAAAACA
CATTAATAATTAAATATAATTAAATGAAAATGATGATGTCCGATGTTATTAACTATAAGA
TATAAATGATTGAAAGAATTAATCTAATTAATAAAAGAAAATTTAAATTTTAAGATGATG
AAAATTAATCTAGTAAAACAATTGATGTAAGCGTCATAAAAAAATCTTCTCTTTTGGATG
AAATAAAGCGAGAAAAAATTTTACAAATAT
>g7759.t4 Gene=g7759 Length=182
MSSPVQGKRRVDTDLIKLIESKHEVTILGGLNEFCVKFYGPKGTPYENGVWKIRVHLPEH
YPFKSPSIGFMNKVYHPNIDEVSGTVCLDVINQSWTALYDLSNIFESFLPQLLTYPNPVD
PLNGDAASLYLHKPEEYKKKVADYVRRFATEEALRETEKKEDSSDSEISDFSDEDEAKDM
EL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g7759.t4 | CDD | cd00195 | UBCc | 31 | 145 | 1.18938E-47 |
| 5 | g7759.t4 | Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 6 | 155 | 2.2E-49 |
| 10 | g7759.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 182 | - |
| 9 | g7759.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 182 | - |
| 2 | g7759.t4 | PANTHER | PTHR24068:SF128 | UBIQUITIN-CONJUGATING ENZYME E2 H | 7 | 179 | 1.6E-72 |
| 3 | g7759.t4 | PANTHER | PTHR24068 | UBIQUITIN-CONJUGATING ENZYME E2 | 7 | 179 | 1.6E-72 |
| 1 | g7759.t4 | Pfam | PF00179 | Ubiquitin-conjugating enzyme | 30 | 144 | 2.8E-37 |
| 7 | g7759.t4 | ProSitePatterns | PS00183 | Ubiquitin-conjugating enzymes active site. | 75 | 91 | - |
| 11 | g7759.t4 | ProSiteProfiles | PS50127 | Ubiquitin-conjugating enzymes family profile. | 31 | 139 | 32.557 |
| 8 | g7759.t4 | SMART | SM00212 | ubc_7 | 5 | 150 | 9.7E-50 |
| 4 | g7759.t4 | SUPERFAMILY | SSF54495 | UBC-like | 9 | 151 | 9.5E-45 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K10576 (ubiquitin-conjugating enzyme E2 H)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
