General information for g7759.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Ubiquitin-conjugating enzyme E2 H.
Parent gene
- The parent gene g7759 is located on chr_2: 25835219..25836750 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7759 | g7759.t6 | TSS | g7759.t6 | 25834544 | 25834544 |
| chr_2 | g7759 | g7759.t6 | isoform | g7759.t6 | 25834735 | 25836750 |
| chr_2 | g7759 | g7759.t6 | exon | g7759.t6.exon1 | 25834735 | 25835022 |
| chr_2 | g7759 | g7759.t6 | cds | g7759.t6.CDS1 | 25834875 | 25835022 |
| chr_2 | g7759 | g7759.t6 | exon | g7759.t6.exon2 | 25835086 | 25835154 |
| chr_2 | g7759 | g7759.t6 | cds | g7759.t6.CDS2 | 25835086 | 25835154 |
| chr_2 | g7759 | g7759.t6 | exon | g7759.t6.exon3 | 25835224 | 25836750 |
| chr_2 | g7759 | g7759.t6 | cds | g7759.t6.CDS3 | 25835224 | 25835345 |
| chr_2 | g7759 | g7759.t6 | TTS | g7759.t6 | 25837343 | 25837343 |
Sequences
>g7759.t6 Gene=g7759 Length=1884
AGGTCACCATTCTGGGCGGTCTCAATGAGTTTTGTGTCAAATTTTATGGGCCAAAAGGGA
CTCCATATGAGAATGGTGTGTGGAAAATCCGCGTTCATCTGCCCGAGCACTACCCTTTTA
AATCACCAAGCATTGGGTTCATGAATAAAGTCTACCATCCAAATATTGATGAAGTCAGCG
GTACTGTCTGCTTAGATGTAATCAATCAAAGCTGGACTGCCTTGTACGATCTGTCCAATA
TTTTTGAATCATTTTTGCCACAACTTCTAACGTATCCAAATCCAGTCGATCCCCTTAATG
GTGATGCAGCCTCGTTATATTTGCATAAGCCAGAAGAATATAAAAAGAAAGTAGCAGATT
ATGTTCGTCGTTTTGCCACTGAAGAAGCACTACGCGAAACAGAAAAGAAAGAGGACAGCT
CAGATTCAGAGATATCAGATTTTAGTGATGAAGATGAAGCAAAGGATATGGAACTATGAT
TGATCTCTTCTAATTCAACAAATGTGGTTTGCACATAAAAATATTTTTTTAAATTTAAAT
TAAAACAAAAAAGCGAATTGCGATATTTTCTTTGCATTGTAAGTTTAGATTTTTTGGATT
TCTTTCAATTTAAATTTTAAATTATTGAGAAAAAAGTTTAACGGTCTATCTTCATCTTCA
AAACAATTTAAAGACAGAGTTGTTCGTTATATTTTAAATTTTATAGCAGTTTAAATTTAA
AACTTTTTCGTTCGTTTTTTATTTACATTTATCAAAACCGTTATTTTTGAAATTTCAAAC
AAAATAATGAATATGAATTTTTCTCAAATTTTAAATTCGAATATTATGAAAAAAATATCA
CAAAAACTTTTTTTTGAAAAATATTTTTCTAATAATGAACAACTCTGGTTTTAAAATTAA
AGTTGATGTTTAATCGCTCATATTTTAATTTGTCTCTCTTCTCAGCTATCTATCAATAAA
ATTTTCCTCTCTCTTTCCTCGTCTCTTCTTCTCCTTCTTGTTCTTGAGAATCGATTTAAT
CAAAGTAGAAAATGTGTTAAATGCGGAAAAATATTAATAATGCTTGCATAAAAATTTTAA
AATATATATTAAAATTGGCTGGAAATTAATAAGAAGTAGATGTGTAATGTTTAAATGGAT
TTAGAGAGAAGTTAATGAAAAAAATTGAAGATAGCCCTGCAATTTCAAATCGTAATCTTT
TCCAAGTTAACACAACTTGTATCATCACATATTCACTTTCAATATCTGTCCCAATTTCTC
TCTATCTTTTACGTGATTGATTTTTAACATAAGTTTTTTCTTCTAAACTAAAAACGATTT
TTGCCATCAAATCATAATTTTAATTCATGTTACCACAGACACAAGAATAACACGATATAA
CACAGTGCAGATAGAAGAAATTCTTTTTTAAAAATATACACACACCAATAATAAAAGTTA
AATCTCATTCAGAACCAAATAAAAAATACAATAAATAAAACAGATCAAAAAAGTGAAATT
TAAACTTTAATAAACAAAAGAAAAAGTGAATATTTTTCCACTCACAATGAAATATAATAA
CATAAAAAGAAATAAAACAAGAAGTTAAGTAATATACGTTTGTAGTTCCAAAGTAGCAAT
TTTGACGATGATTGTTATGCAGTTACAGAATTGAAGTAAAGCAAAAGCAAAACACATTAA
TAATTAAATATAATTAAATGAAAATGATGATGTCCGATGTTATTAACTATAAGATATAAA
TGATTGAAAGAATTAATCTAATTAATAAAAGAAAATTTAAATTTTAAGATGATGAAAATT
AATCTAGTAAAACAATTGATGTAAGCGTCATAAAAAAATCTTCTCTTTTGGATGAAATAA
AGCGAGAAAAAATTTTACAAATAT
>g7759.t6 Gene=g7759 Length=112
MNKVYHPNIDEVSGTVCLDVINQSWTALYDLSNIFESFLPQLLTYPNPVDPLNGDAASLY
LHKPEEYKKKVADYVRRFATEEALRETEKKEDSSDSEISDFSDEDEAKDMEL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7759.t6 | Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 85 | 4.3E-29 |
| 9 | g7759.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 112 | - |
| 8 | g7759.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 112 | - |
| 2 | g7759.t6 | PANTHER | PTHR24068:SF128 | UBIQUITIN-CONJUGATING ENZYME E2 H | 1 | 109 | 1.8E-40 |
| 3 | g7759.t6 | PANTHER | PTHR24068 | UBIQUITIN-CONJUGATING ENZYME E2 | 1 | 109 | 1.8E-40 |
| 1 | g7759.t6 | Pfam | PF00179 | Ubiquitin-conjugating enzyme | 2 | 74 | 3.2E-19 |
| 6 | g7759.t6 | ProSitePatterns | PS00183 | Ubiquitin-conjugating enzymes active site. | 5 | 21 | - |
| 10 | g7759.t6 | ProSiteProfiles | PS50127 | Ubiquitin-conjugating enzymes family profile. | 1 | 69 | 19.904 |
| 7 | g7759.t6 | SMART | SM00212 | ubc_7 | 1 | 80 | 0.0017 |
| 4 | g7759.t6 | SUPERFAMILY | SSF54495 | UBC-like | 2 | 81 | 1.16E-24 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
