General information for g776.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative aminopeptidase W07G4.4.
Parent gene
- The parent gene g776 is located on chr_3: 5969453..5971306 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g776 | g776.t1 | isoform | g776.t1 | 5969453 | 5971306 |
| chr_3 | g776 | g776.t1 | exon | g776.t1.exon1 | 5969453 | 5969612 |
| chr_3 | g776 | g776.t1 | cds | g776.t1.CDS1 | 5969453 | 5969612 |
| chr_3 | g776 | g776.t1 | exon | g776.t1.exon2 | 5969674 | 5970010 |
| chr_3 | g776 | g776.t1 | cds | g776.t1.CDS2 | 5969674 | 5970010 |
| chr_3 | g776 | g776.t1 | exon | g776.t1.exon3 | 5970071 | 5971148 |
| chr_3 | g776 | g776.t1 | cds | g776.t1.CDS3 | 5970071 | 5971148 |
| chr_3 | g776 | g776.t1 | exon | g776.t1.exon4 | 5971295 | 5971306 |
| chr_3 | g776 | g776.t1 | cds | g776.t1.CDS4 | 5971295 | 5971306 |
| chr_3 | g776 | g776.t1 | TSS | g776.t1 | 5971390 | 5971390 |
| chr_3 | g776 | g776.t1 | TTS | g776.t1 | NA | NA |
Sequences
>g776.t1 Gene=g776 Length=1587
ATGGGCCAAAAGTTAATCTTTTATTTTGATTATTATTTAATAGCCTTAGAAATTCTTGAT
AAGATAAACTCTATTATTTATAACTTTAGCTTTCCAAATATAAAAGCGAGTGAGCTTTCA
AGCGAAGATTATGATTGCCTCGTTATTGTTCAAGATAAACAAATACCAGCTGCTATAAGT
GATTATGTTGCTGATTCAGTAAAAATTGATAAAGGTTTTTCATCGGACGTACAATGTTTT
AAAGTTGATAATAAATTTACTGTGTACAGTCCATTGAATTTGGATGATTATTCTGATGTT
AGGGATTATTTTCGAGCAGCAAAAAAAGGTGTTGAACGTGCAATGAAAGCCGGCTATCGT
AACCCATTGCTTCTAATTCCAAGCACTCCGAAATTCAAGTATTCTGAGTTGAACGTTATT
TTGGGTGCTCTAGCAGCTTCATATGTGCCTGCTCAATATCGTGAACAAGTTCCAGAAAAG
GCTTTTCGTTTAGATGCAATTAACGTTGCATGGTCACAAAAAGATCAACTTGCGCAACTC
ATTGACACTGTAAATTGGATGTATTCTGGATTACAAATCGCCAAAGACATCGGAGGCGGT
GATCCAGAATTTATGGCGCCACCAAAAGTTCAAAAATACATTGAAAGGGAATTCACTAGT
GGAGTGATCAAGATAGAAGTTATTTCTGATCAGGATCGTTTAGAAAAAGAATTTCCATTA
TTTGGTGCTGTTAACCGTGCTTCACGAAAAATAGAGCGTCATCAAGGTCGTATAATTTTT
ATGGAATATGTTCCACCAAAAAAATCTCGTCGTACTTTGATGTTAATTGGGAAAGGTGTT
ACATATGATACTGGTGGAGCTGATATTAAAGCTGGTGGAGTAATGGCTGGAATGAGTCGA
GACAAATGTGGGGCAGCAGCTGTTGCTGGCTTTATGAAATGCGTTGAATTGAAACGTCCT
GAAGATGTTCATGTTATTGCTGCTTTGTGCATGGTTCGCAATAATGTCGGCGAAGAGTGT
TATGTTGCCGATGAAATCATCACATCAAGAGCTGGCGTTCGTGTACGTGTAGGAAACACT
GATGCTGAAGGTCGCATGGCTATGGCAGATGTATTGTGCTTGATGAAAGAACGTGCTGTC
AAGGAAAATTTGCCTGATTGCTTCTTATACACTATTGCAACTCTCACTGGGCATGCATGT
CTTGCTCTAGGAGATTATACTGGTGTTGTAGATAATAAAGTTGCTGAAAATGCAAGTCAT
GCAACTGATTTCTGTAAAGCAGGTGAACAAATTGGTGATCCATCAGCCATAAGTCCATTG
CGTCGTGAAGATTTCGATTTTCATAAATCAAAGGGCTATGGAGAGGATCTTTTACAATGC
AATAACTTGCCATCGAGTAGAACTCCTAGAGGTCATCAAACTCCAGCTGCATTTTTAATT
ATGGCATCGGGATTAGATCAAAATGATGCAAGTTCAACACGTCCACTTAAATATACACAT
CTTGATATCGCAGGAAGCTCTGGTGACGTACCAAATCCTCCAACAGGGACCCCGATTTTG
TCTCTTGCCCAATTGCATCTTATGTAA
>g776.t1 Gene=g776 Length=528
MGQKLIFYFDYYLIALEILDKINSIIYNFSFPNIKASELSSEDYDCLVIVQDKQIPAAIS
DYVADSVKIDKGFSSDVQCFKVDNKFTVYSPLNLDDYSDVRDYFRAAKKGVERAMKAGYR
NPLLLIPSTPKFKYSELNVILGALAASYVPAQYREQVPEKAFRLDAINVAWSQKDQLAQL
IDTVNWMYSGLQIAKDIGGGDPEFMAPPKVQKYIEREFTSGVIKIEVISDQDRLEKEFPL
FGAVNRASRKIERHQGRIIFMEYVPPKKSRRTLMLIGKGVTYDTGGADIKAGGVMAGMSR
DKCGAAAVAGFMKCVELKRPEDVHVIAALCMVRNNVGEECYVADEIITSRAGVRVRVGNT
DAEGRMAMADVLCLMKERAVKENLPDCFLYTIATLTGHACLALGDYTGVVDNKVAENASH
ATDFCKAGEQIGDPSAISPLRREDFDFHKSKGYGEDLLQCNNLPSSRTPRGHQTPAAFLI
MASGLDQNDASSTRPLKYTHLDIAGSSGDVPNPPTGTPILSLAQLHLM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g776.t1 | CDD | cd00433 | Peptidase_M17 | 45 | 525 | 1.92139E-104 |
| 10 | g776.t1 | Gene3D | G3DSA:3.40.630.10 | Zn peptidases | 179 | 526 | 2.4E-78 |
| 2 | g776.t1 | PANTHER | PTHR11963 | LEUCINE AMINOPEPTIDASE-RELATED | 58 | 525 | 1.1E-97 |
| 3 | g776.t1 | PANTHER | PTHR11963:SF23 | ZGC:152830 | 58 | 525 | 1.1E-97 |
| 5 | g776.t1 | PRINTS | PR00481 | Cytosol aminopeptidase signature | 273 | 290 | 1.7E-22 |
| 4 | g776.t1 | PRINTS | PR00481 | Cytosol aminopeptidase signature | 295 | 316 | 1.7E-22 |
| 6 | g776.t1 | PRINTS | PR00481 | Cytosol aminopeptidase signature | 333 | 354 | 1.7E-22 |
| 7 | g776.t1 | PRINTS | PR00481 | Cytosol aminopeptidase signature | 355 | 375 | 1.7E-22 |
| 1 | g776.t1 | Pfam | PF00883 | Cytosol aminopeptidase family, catalytic domain | 193 | 519 | 7.9E-67 |
| 9 | g776.t1 | ProSitePatterns | PS00631 | Cytosol aminopeptidase signature. | 359 | 366 | - |
| 8 | g776.t1 | SUPERFAMILY | SSF53187 | Zn-dependent exopeptidases | 188 | 526 | 1.0E-68 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006508 | proteolysis | BP |
| GO:0019538 | protein metabolic process | BP |
| GO:0005737 | cytoplasm | CC |
| GO:0070006 | metalloaminopeptidase activity | MF |
| GO:0030145 | manganese ion binding | MF |
KEGG
Orthology
- This transcript has been annotated with K01255 (leucyl aminopeptidase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
