General information for g776.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Putative aminopeptidase W07G4.4.
Parent gene
- The parent gene g776 is located on chr_3: 5969453..5971306 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g776 | g776.t2 | isoform | g776.t2 | 5968209 | 5970077 |
| chr_3 | g776 | g776.t2 | TTS | g776.t2 | 5968209 | 5968209 |
| chr_3 | g776 | g776.t2 | exon | g776.t2.exon1 | 5968209 | 5969612 |
| chr_3 | g776 | g776.t2 | cds | g776.t2.CDS1 | 5969453 | 5969612 |
| chr_3 | g776 | g776.t2 | exon | g776.t2.exon2 | 5969674 | 5970010 |
| chr_3 | g776 | g776.t2 | cds | g776.t2.CDS2 | 5969674 | 5970005 |
| chr_3 | g776 | g776.t2 | exon | g776.t2.exon3 | 5970071 | 5970077 |
| chr_3 | g776 | g776.t2 | TSS | g776.t2 | NA | NA |
Sequences
>g776.t2 Gene=g776 Length=1748
GCTGAAGGTCGCATGGCTATGGCAGATGTATTGTGCTTGATGAAAGAACGTGCTGTCAAG
GAAAATTTGCCTGATTGCTTCTTATACACTATTGCAACTCTCACTGGGCATGCATGTCTT
GCTCTAGGAGATTATACTGGTGTTGTAGATAATAAAGTTGCTGAAAATGCAAGTCATGCA
ACTGATTTCTGTAAAGCAGGTGAACAAATTGGTGATCCATCAGCCATAAGTCCATTGCGT
CGTGAAGATTTCGATTTTCATAAATCAAAGGGCTATGGAGAGGATCTTTTACAATGCAAT
AACTTGCCATCGAGTAGAACTCCTAGAGGTCATCAAACTCCAGCTGCATTTTTAATTATG
GCATCGGGATTAGATCAAAATGATGCAAGTTCAACACGTCCACTTAAATATACACATCTT
GATATCGCAGGAAGCTCTGGTGACGTACCAAATCCTCCAACAGGGACCCCGATTTTGTCT
CTTGCCCAATTGCATCTTATGTAAAACATTTTTGGCTTGTCAACTTTTCTTACCTATTTG
AACTTGAGGCTATGAAAAATCTATTTTGTATTGATTATAAAAAATTGGTGAAAGTCTCTG
CGTATATCAGAGGACTTTAGCGCATTTGCGCCCAGATCAGTTATATTAACAAGTTAAATA
AAAGAATAGTTTACGATTTGAATACATTTTATTAATCCACGTCGAGATCGTCAAGTCGAA
TTATCTCGCGATAATTGATGCGCCAAGTATTCTGGATCTTCACGTCGCTTTTGTTGTGTT
GATTTATCGCGTTCCGACTCGTTATGCAAGTATTCCGGATTCAATCTTCTCTTTTGTCGA
CTCGAATCAATTCTCTTCTTTTCTCCTTTCAAAGTTAAAGGTTTTGCCTTTCTTTTTGGC
ATTATCTGTAAATAATAAAGAATAAAAATAAAAAAAATCAAATAAAATATTTTAATTTAC
CTTCAAAATATTAATTTTCGAATTTTCTATAAATTTATAGTGATTATTCACTGAGCTTCA
ATTTGTTTTGCTGTAATAAACAATTAACTAACATTTAATGACTAAATTAACAATTAATTC
AACTTACTTACTTTTAATTTAGAATTTTTAATAAATTTTTGCAATTTTAATTTTGCTTTT
TTGTTTACACATAAACATACGCGCAGCTTCGCGCACTAACAATTTAAATTTTCCGTTACA
TTTCGATTTCGAGTTGATGAACAAAATAAATAATATGTATCAATGCAAAAGAGAATACGA
GTCACTAATTGAGAATAAGAAAATGTTTTTATTAAAATGATTTGATATTTCGTTGATAAC
TTTCGATTCGAAACATAATATTGATTTCATTCAATACAACTGTCAAGTCGAATTCAAATT
CAAATGTTGCGTGTGACAAAATGTTGCGCGACAGAAAAAAATTACAAATTTTCAATATGG
AAATTATAATTCGTAATTTACAAATTATCGCAATCAGTGACAACTTTCTAACTATAATTG
TTCCCAGTAACTCTATAGCACAAATCAAATGCAAAAAACCGTAAGCTTCTAGCTATTGTA
ATTTTCGAGATTTCACAACCCGAACAGCCGAACAGCCAGTCAGCCGAACAAAGTGAAATT
ATAAACTGCATTGTTGTTCCAAAAATGCGCTAAAAATGGATGTAAAAATTTTCTTGTACT
TAATCTGCTTTTTTGGTGAAGGTTTTTTGCATATTGCATATAATAAATGAAAAATATTAG
GCCAACAA
>g776.t2 Gene=g776 Length=163
MAMADVLCLMKERAVKENLPDCFLYTIATLTGHACLALGDYTGVVDNKVAENASHATDFC
KAGEQIGDPSAISPLRREDFDFHKSKGYGEDLLQCNNLPSSRTPRGHQTPAAFLIMASGL
DQNDASSTRPLKYTHLDIAGSSGDVPNPPTGTPILSLAQLHLM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g776.t2 | Gene3D | G3DSA:3.40.630.10 | Zn peptidases | 1 | 161 | 0 |
| 2 | g776.t2 | PANTHER | PTHR11963 | LEUCINE AMINOPEPTIDASE-RELATED | 1 | 160 | 0 |
| 3 | g776.t2 | PANTHER | PTHR11963:SF23 | ZGC:152830 | 1 | 160 | 0 |
| 1 | g776.t2 | Pfam | PF00883 | Cytosol aminopeptidase family, catalytic domain | 1 | 154 | 0 |
| 4 | g776.t2 | SUPERFAMILY | SSF53187 | Zn-dependent exopeptidases | 1 | 161 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006508 | proteolysis | BP |
| GO:0019538 | protein metabolic process | BP |
| GO:0005737 | cytoplasm | CC |
| GO:0070006 | metalloaminopeptidase activity | MF |
| GO:0030145 | manganese ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
