General information for g776.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative aminopeptidase W07G4.4.
Parent gene
- The parent gene g776 is located on chr_3: 5969453..5971306 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g776 | g776.t3 | isoform | g776.t3 | 5969453 | 5971306 |
| chr_3 | g776 | g776.t3 | exon | g776.t3.exon1 | 5969453 | 5969612 |
| chr_3 | g776 | g776.t3 | cds | g776.t3.CDS1 | 5969453 | 5969612 |
| chr_3 | g776 | g776.t3 | exon | g776.t3.exon2 | 5969674 | 5970010 |
| chr_3 | g776 | g776.t3 | cds | g776.t3.CDS2 | 5969674 | 5970010 |
| chr_3 | g776 | g776.t3 | exon | g776.t3.exon3 | 5970071 | 5971071 |
| chr_3 | g776 | g776.t3 | cds | g776.t3.CDS3 | 5970071 | 5970818 |
| chr_3 | g776 | g776.t3 | exon | g776.t3.exon4 | 5971295 | 5971306 |
| chr_3 | g776 | g776.t3 | TSS | g776.t3 | 5971390 | 5971390 |
| chr_3 | g776 | g776.t3 | TTS | g776.t3 | NA | NA |
Sequences
>g776.t3 Gene=g776 Length=1510
ATGGGCCAAAAGCTTTCCAAATATAAAAGCGAGTGAGCTTTCAAGCGAAGATTATGATTG
CCTCGTTATTGTTCAAGATAAACAAATACCAGCTGCTATAAGTGATTATGTTGCTGATTC
AGTAAAAATTGATAAAGGTTTTTCATCGGACGTACAATGTTTTAAAGTTGATAATAAATT
TACTGTGTACAGTCCATTGAATTTGGATGATTATTCTGATGTTAGGGATTATTTTCGAGC
AGCAAAAAAAGGTGTTGAACGTGCAATGAAAGCCGGCTATCGTAACCCATTGCTTCTAAT
TCCAAGCACTCCGAAATTCAAGTATTCTGAGTTGAACGTTATTTTGGGTGCTCTAGCAGC
TTCATATGTGCCTGCTCAATATCGTGAACAAGTTCCAGAAAAGGCTTTTCGTTTAGATGC
AATTAACGTTGCATGGTCACAAAAAGATCAACTTGCGCAACTCATTGACACTGTAAATTG
GATGTATTCTGGATTACAAATCGCCAAAGACATCGGAGGCGGTGATCCAGAATTTATGGC
GCCACCAAAAGTTCAAAAATACATTGAAAGGGAATTCACTAGTGGAGTGATCAAGATAGA
AGTTATTTCTGATCAGGATCGTTTAGAAAAAGAATTTCCATTATTTGGTGCTGTTAACCG
TGCTTCACGAAAAATAGAGCGTCATCAAGGTCGTATAATTTTTATGGAATATGTTCCACC
AAAAAAATCTCGTCGTACTTTGATGTTAATTGGGAAAGGTGTTACATATGATACTGGTGG
AGCTGATATTAAAGCTGGTGGAGTAATGGCTGGAATGAGTCGAGACAAATGTGGGGCAGC
AGCTGTTGCTGGCTTTATGAAATGCGTTGAATTGAAACGTCCTGAAGATGTTCATGTTAT
TGCTGCTTTGTGCATGGTTCGCAATAATGTCGGCGAAGAGTGTTATGTTGCCGATGAAAT
CATCACATCAAGAGCTGGCGTTCGTGTACGTGTAGGAAACACTGATGCTGAAGGTCGCAT
GGCTATGGCAGATGTATTGTGCTTGATGAAAGAACGTGCTGTCAAGGAAAATTTGCCTGA
TTGCTTCTTATACACTATTGCAACTCTCACTGGGCATGCATGTCTTGCTCTAGGAGATTA
TACTGGTGTTGTAGATAATAAAGTTGCTGAAAATGCAAGTCATGCAACTGATTTCTGTAA
AGCAGGTGAACAAATTGGTGATCCATCAGCCATAAGTCCATTGCGTCGTGAAGATTTCGA
TTTTCATAAATCAAAGGGCTATGGAGAGGATCTTTTACAATGCAATAACTTGCCATCGAG
TAGAACTCCTAGAGGTCATCAAACTCCAGCTGCATTTTTAATTATGGCATCGGGATTAGA
TCAAAATGATGCAAGTTCAACACGTCCACTTAAATATACACATCTTGATATCGCAGGAAG
CTCTGGTGACGTACCAAATCCTCCAACAGGGACCCCGATTTTGTCTCTTGCCCAATTGCA
TCTTATGTAA
>g776.t3 Gene=g776 Length=414
MKAGYRNPLLLIPSTPKFKYSELNVILGALAASYVPAQYREQVPEKAFRLDAINVAWSQK
DQLAQLIDTVNWMYSGLQIAKDIGGGDPEFMAPPKVQKYIEREFTSGVIKIEVISDQDRL
EKEFPLFGAVNRASRKIERHQGRIIFMEYVPPKKSRRTLMLIGKGVTYDTGGADIKAGGV
MAGMSRDKCGAAAVAGFMKCVELKRPEDVHVIAALCMVRNNVGEECYVADEIITSRAGVR
VRVGNTDAEGRMAMADVLCLMKERAVKENLPDCFLYTIATLTGHACLALGDYTGVVDNKV
AENASHATDFCKAGEQIGDPSAISPLRREDFDFHKSKGYGEDLLQCNNLPSSRTPRGHQT
PAAFLIMASGLDQNDASSTRPLKYTHLDIAGSSGDVPNPPTGTPILSLAQLHLM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g776.t3 | Gene3D | G3DSA:3.40.630.10 | Zn peptidases | 65 | 412 | 1.1E-78 |
| 2 | g776.t3 | PANTHER | PTHR11963 | LEUCINE AMINOPEPTIDASE-RELATED | 24 | 411 | 8.1E-95 |
| 3 | g776.t3 | PANTHER | PTHR11963:SF23 | ZGC:152830 | 24 | 411 | 8.1E-95 |
| 5 | g776.t3 | PRINTS | PR00481 | Cytosol aminopeptidase signature | 159 | 176 | 7.5E-23 |
| 7 | g776.t3 | PRINTS | PR00481 | Cytosol aminopeptidase signature | 181 | 202 | 7.5E-23 |
| 4 | g776.t3 | PRINTS | PR00481 | Cytosol aminopeptidase signature | 219 | 240 | 7.5E-23 |
| 6 | g776.t3 | PRINTS | PR00481 | Cytosol aminopeptidase signature | 241 | 261 | 7.5E-23 |
| 1 | g776.t3 | Pfam | PF00883 | Cytosol aminopeptidase family, catalytic domain | 79 | 405 | 3.7E-67 |
| 9 | g776.t3 | ProSitePatterns | PS00631 | Cytosol aminopeptidase signature. | 245 | 252 | - |
| 8 | g776.t3 | SUPERFAMILY | SSF53187 | Zn-dependent exopeptidases | 74 | 412 | 4.39E-69 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006508 | proteolysis | BP |
| GO:0019538 | protein metabolic process | BP |
| GO:0005737 | cytoplasm | CC |
| GO:0070006 | metalloaminopeptidase activity | MF |
| GO:0030145 | manganese ion binding | MF |
KEGG
Orthology
- This transcript has been annotated with K01255 (leucyl aminopeptidase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
