General information for g7764.t18
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Proteasome subunit beta type-4.
Parent gene
- The parent gene g7764 is located on chr_2: 25865261..25866145 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7764 | g7764.t18 | TSS | g7764.t18 | 25865022 | 25865022 |
| chr_2 | g7764 | g7764.t18 | isoform | g7764.t18 | 25865112 | 25866132 |
| chr_2 | g7764 | g7764.t18 | exon | g7764.t18.exon1 | 25865112 | 25865245 |
| chr_2 | g7764 | g7764.t18 | cds | g7764.t18.CDS1 | 25865227 | 25865245 |
| chr_2 | g7764 | g7764.t18 | exon | g7764.t18.exon2 | 25865465 | 25866132 |
| chr_2 | g7764 | g7764.t18 | cds | g7764.t18.CDS2 | 25865465 | 25866081 |
| chr_2 | g7764 | g7764.t18 | TTS | g7764.t18 | 25866145 | 25866145 |
Sequences
>g7764.t18 Gene=g7764 Length=802
ATGATGTCGAATAATGGAGTTAATTTCGCACCGTTTTGGCATAATGGACCAGCACCAGGT
AGTTTTTATAACTTCCCTCAAAATAATATCAAATCAAATTCGGCAATTGATGAATATGGA
TTTCAAAGAAATGGTCGGTGTTAAATACGATAAAGGTGTTATAATTGCTGGAGATAAGCT
TGTAAGCTACGGAAATTTAGCTCGCTACCATAATGTTGATCGTGTATTTAAGATAAATGA
AAACATAATTTTGGGGATGAGTGGCGATTACGCGGATTTTCAATTTATTAAACAGTACAT
TGATGAAATAATTCTCTCTGATTTTTCGGCTGATGATAGAATTGTATTAAAACCAAAAGA
TTTATATACATGGTTAACAAGAGTTTTGTACAATCGTCGTTCACGTTTTAATCCTTTGTG
GCTTGATATGGTTGTCGGAGGAATGCAAGGTGAAGAACCCTTTTTGGGCCATATTAACAT
TCGTGGAAGATCATATACAAACGACGTCATTTCAACCGGCTATGGTACTCATCTTGCTCT
TCCTTTACTTCGCGAATATTCGGAAAAAGGACCATTAAATGAAGAGACTGCTCAGCAGCT
TATTCAAAAATCGATGGAAGTATTGTTCTACCGTGATTGTCGTGGTTATCCAAAATATTC
TCAAGCAAACATCAATGCAAATGGTGTAACTGTAAGTGATCATGAAGTTAAACAAAATTG
GGATTTGGCTCTGAGCATTAAGGGATATTAAGAAGTCCATTATCATATTTTATTTCATTT
CAATTATGAGAAAAATAAACAG
>g7764.t18 Gene=g7764 Length=211
MDFKEMVGVKYDKGVIIAGDKLVSYGNLARYHNVDRVFKINENIILGMSGDYADFQFIKQ
YIDEIILSDFSADDRIVLKPKDLYTWLTRVLYNRRSRFNPLWLDMVVGGMQGEEPFLGHI
NIRGRSYTNDVISTGYGTHLALPLLREYSEKGPLNEETAQQLIQKSMEVLFYRDCRGYPK
YSQANINANGVTVSDHEVKQNWDLALSIKGY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g7764.t18 | CDD | cd03760 | proteasome_beta_type_4 | 7 | 195 | 1.93172E-97 |
| 6 | g7764.t18 | Gene3D | G3DSA:3.60.20.10 | Glutamine Phosphoribosylpyrophosphate | 5 | 211 | 4.8E-51 |
| 2 | g7764.t18 | PANTHER | PTHR11599:SF5 | PROTEASOME SUBUNIT BETA TYPE-4 | 7 | 198 | 1.7E-54 |
| 3 | g7764.t18 | PANTHER | PTHR11599 | PROTEASOME SUBUNIT ALPHA/BETA | 7 | 198 | 1.7E-54 |
| 1 | g7764.t18 | Pfam | PF00227 | Proteasome subunit | 6 | 177 | 1.1E-25 |
| 5 | g7764.t18 | ProSitePatterns | PS00854 | Proteasome beta-type subunits signature. | 7 | 54 | - |
| 4 | g7764.t18 | SUPERFAMILY | SSF56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 7 | 203 | 1.24E-44 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0051603 | proteolysis involved in cellular protein catabolic process | BP |
| GO:0004298 | threonine-type endopeptidase activity | MF |
| GO:0005839 | proteasome core complex | CC |
KEGG
Orthology
- This transcript has been annotated with K02736 (20S proteasome subunit beta 7)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
