General information for g7766.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Cyclic AMP-dependent transcription factor ATF-6 alpha.
Parent gene
- The parent gene g7766 is located on chr_2: 25869449..25869802 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7766 | g7766.t1 | isoform | g7766.t1 | 25868063 | 25869802 |
| chr_2 | g7766 | g7766.t1 | exon | g7766.t1.exon1 | 25868063 | 25868084 |
| chr_2 | g7766 | g7766.t1 | cds | g7766.t1.CDS1 | 25868063 | 25868084 |
| chr_2 | g7766 | g7766.t1 | exon | g7766.t1.exon2 | 25868151 | 25869461 |
| chr_2 | g7766 | g7766.t1 | cds | g7766.t1.CDS2 | 25868151 | 25869461 |
| chr_2 | g7766 | g7766.t1 | exon | g7766.t1.exon3 | 25869516 | 25869802 |
| chr_2 | g7766 | g7766.t1 | cds | g7766.t1.CDS3 | 25869516 | 25869802 |
| chr_2 | g7766 | g7766.t1 | TSS | g7766.t1 | NA | NA |
| chr_2 | g7766 | g7766.t1 | TTS | g7766.t1 | NA | NA |
Sequences
>g7766.t1 Gene=g7766 Length=1620
ATGGATTTTCTGGACTTTCAAATAAATTCGATTGGATCACCATCGTCTGATTTAAATGAT
ATTTTTAAAGCAGAAAATATAATTATAGATGATAATGACAATGAGTTAAACACAATCAAT
CCAGATGATTTTCTAAATGAAAGTTTTTTGAGTGAATTTAAGACTGAAATAGAGAGAAAA
AATTTCGAATGCAGCAGTAACAGTAGCATGAATAGCTTTGATAATATTTATGGATCACAA
ATGATACAATTGACACCTCCTATTAGTCCTAATCCACAACCAATAATTATTGATAATAAT
TTATATTCAAACATAAGAGTGATTCCTATCATAACTGCCACAACTTCACATCATATTGTT
CCGCAACAGCAAATTGAACGAAAAATTCAACCTATAATCCCAAAACCTTCACTTTCTTCA
TCAGATTCTGAAACAACATCACAAAATTATATAATTTCTTCGAAAACAAATTCGCCGGTT
GACAAAGCAATGATTAAACAAGCACGTTTGATAAGAAATCGAGAAAGTGCTTTACAATCT
CGAAGGAAGAAGAAAGAATATTTGACAAACCTTGAAGTTGAAAACAACAGCTTGCGAAAA
GAAAATAATATGTTGAAAGAAGAAAACTGCCAGTTAAAAGCAAAATTGAAAAGCTATACC
AACTTCACATGCCGTTGTGCAAGCTCAATTTCAAACAAAATTCCAACTATAAAAAATACA
GGTCTTTTGTTCGCACTTGTTCTAATGATTGGTTTTAATCTTATTCCAATTGGAAGTTTT
TTCACTGCAACTAATAGTATTAAAAAATCACAAATTGCAAAACCAAATGTTGAATTTCAT
TCACGACATTTATTATTTGTTAATGTGAATAACACTACTAGTGATGACATTGAGGAACAA
AATATTAAAGTTCCTCTATACTTTAATCAAACAGACCGTATTAGAAAAGCTAATATTGAA
AATATTCGTCGATGGATACCACAACCAGATTTATTCAATGTGTCTAACTTATACGATAAT
TTTAATTTTGCTGATAGCGATGAAAAACTAGCAAAAATGCTTGAAAAATCACGCGATCAA
ATGAAAAAGCATACAAAGTTAAAGAAAAAAATTCCAAAAAAGAAGGCATCGTCATCAGAA
AAAACAGAGAACGTTCCAGTTCAACTTTATGATTCAAACTTCTTTAAGATTCATGAATTT
TTTGAAGAAATTAATCGAAAAGAAGATACATTTTATTTATTTTCATTTAGAGCAGACCAT
CTATTATTACCTGCGATCGAGAAAAACTTTAGTCAAATAATTAAAATGAATTTAATAATG
CCTCGAAGTAATGACTCATTAACAACTTCTGAGAAGATAACAATGATGCAAATAGAAACA
ATAATTCTTAATACATCGCTCATAGAAATCGCAGAAAAATCGATTCCAGGTGAATTTAAA
ACATCATCATCGTACTCAAACTCAACACAAACACCAACAATGTGCAATGAATCAATTCAA
AATGTAAGAAATTTTGAAGGCACAAAAAACACACAGGAACCGTTTAAGAGAGCTAAATTT
GCTCCATATTTTGATCTCTCACTCCCATCAGTTTCATCCTCAATAAATTCAAGAAAATAA
>g7766.t1 Gene=g7766 Length=539
MDFLDFQINSIGSPSSDLNDIFKAENIIIDDNDNELNTINPDDFLNESFLSEFKTEIERK
NFECSSNSSMNSFDNIYGSQMIQLTPPISPNPQPIIIDNNLYSNIRVIPIITATTSHHIV
PQQQIERKIQPIIPKPSLSSSDSETTSQNYIISSKTNSPVDKAMIKQARLIRNRESALQS
RRKKKEYLTNLEVENNSLRKENNMLKEENCQLKAKLKSYTNFTCRCASSISNKIPTIKNT
GLLFALVLMIGFNLIPIGSFFTATNSIKKSQIAKPNVEFHSRHLLFVNVNNTTSDDIEEQ
NIKVPLYFNQTDRIRKANIENIRRWIPQPDLFNVSNLYDNFNFADSDEKLAKMLEKSRDQ
MKKHTKLKKKIPKKKASSSEKTENVPVQLYDSNFFKIHEFFEEINRKEDTFYLFSFRADH
LLLPAIEKNFSQIIKMNLIMPRSNDSLTTSEKITMMQIETIILNTSLIEIAEKSIPGEFK
TSSSYSNSTQTPTMCNESIQNVRNFEGTKNTQEPFKRAKFAPYFDLSLPSVSSSINSRK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7766.t1 | Coils | Coil | Coil | 181 | 208 | - |
| 4 | g7766.t1 | Gene3D | G3DSA:1.20.5.170 | - | 166 | 217 | 3.3E-11 |
| 11 | g7766.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 382 | - |
| 2 | g7766.t1 | PANTHER | PTHR46164 | ATF6, ISOFORM C | 12 | 497 | 9.3E-47 |
| 1 | g7766.t1 | Pfam | PF00170 | bZIP transcription factor | 164 | 216 | 3.5E-9 |
| 7 | g7766.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 241 | - |
| 8 | g7766.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 242 | 264 | - |
| 6 | g7766.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 265 | 539 | - |
| 12 | g7766.t1 | ProSiteProfiles | PS50217 | Basic-leucine zipper (bZIP) domain profile. | 166 | 219 | 9.301 |
| 10 | g7766.t1 | SMART | SM00338 | brlzneu | 161 | 225 | 4.7E-4 |
| 3 | g7766.t1 | SUPERFAMILY | SSF57959 | Leucine zipper domain | 166 | 217 | 5.42E-9 |
| 9 | g7766.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 242 | 264 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | BP |
| GO:0003700 | DNA-binding transcription factor activity | MF |
KEGG
Orthology
- This transcript has been annotated with K09054 (cyclic AMP-dependent transcription factor ATF-6 alpha)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
