Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7767 g7767.t13 TSS g7767.t13 25871683 25871683
chr_2 g7767 g7767.t13 isoform g7767.t13 25871697 25873057
chr_2 g7767 g7767.t13 exon g7767.t13.exon1 25871697 25871867
chr_2 g7767 g7767.t13 cds g7767.t13.CDS1 25871697 25871867
chr_2 g7767 g7767.t13 exon g7767.t13.exon2 25871928 25872179
chr_2 g7767 g7767.t13 cds g7767.t13.CDS2 25871928 25872161
chr_2 g7767 g7767.t13 exon g7767.t13.exon3 25872469 25873057
chr_2 g7767 g7767.t13 TTS g7767.t13 25873093 25873093

Sequences

>g7767.t13 Gene=g7767 Length=1012
ATGGGAGATCACGCACATCATCATCATCATCATATGCCAGACCTTGATGCAACAAGTGCT
ATGCCAGTGCTTTCAACTGGAATGGATCATCATCACATGCATTCCGATATGGGACATTCA
ATGAATGACTCAGCTGCATCTCATGCTTTTCATCACATGATGTCCATGGCTTTTCATGGC
GGTTGCAACGAAACAATTTTATTCACTCAATGGACGATTGACAGTTGCTTTGGTCTTGTG
TGGTCAATGATTGTTATTTTCATTTTTGGTATTCTATATGAAGGTTTAAAATATTATCGT
GAACATTTATTCTGGAAGACTTATAATGCATTGCAATACAGAGCAGTAGGTGCTCCAGAG
AAAAATGGAACATCTGAAAATGCCGATTCACGTGTTGTACAGTAAGTAGAAAATCATTGA
ATTACCAACAATATTTTCACTGATGCATCTTTATCAATCGTTTCTACATTTAATTCAAGT
AACATTATCACTAATGCTGATGCTCATATTTATGACATACAACACATGGTTATGTCTTGC
CGTTGTTTTTGGAGCTATGGTAGGATACTTTTTGTTCGGATGGAAGAAATCAATAGTAGT
CGATGTTACAGAGCATTGTCATTGAATCGCTCTGAATCTATTCGACTCGTTATGTAAAAT
CTTCAAACGAGTCCAGAGTCTCAATTTAAGAATATCATATGTGAACATAAACATAATAAA
AATCGTAAGATATCATGTCTGGAATTGCCTCCGATCGGTCATAAGAAGAACTTTAAACAG
ATTAAGAAGATACACATAAAACACAATGATCAGCCAGTAAAAAAACATTGTGAAATGTTG
ATCATATCTGCATTTTGTTTAAAGTGGTGATATAAAGACTCTGATAATACATAATACCTA
AATAGTTTAATGAAAAAGAATTTAGATGTATAGTTTATATTATTCTTTCAATATGGAACA
ACAACATGCTGACAAAAATGTGTCTTATTACACATTATAAAACTTACATACA

>g7767.t13 Gene=g7767 Length=134
MGDHAHHHHHHMPDLDATSAMPVLSTGMDHHHMHSDMGHSMNDSAASHAFHHMMSMAFHG
GCNETILFTQWTIDSCFGLVWSMIVIFIFGILYEGLKYYREHLFWKTYNALQYRAVGAPE
KNGTSENADSRVVQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g7767.t13 PANTHER PTHR12483:SF27 COPPER TRANSPORTER 1A, ISOFORM C-RELATED 28 110 1.6E-13
3 g7767.t13 PANTHER PTHR12483 SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS 28 110 1.6E-13
1 g7767.t13 Pfam PF04145 Ctr copper transporter family 56 115 4.3E-12
6 g7767.t13 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 76 -
7 g7767.t13 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 77 96 -
5 g7767.t13 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 97 134 -
4 g7767.t13 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 77 96 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0035434 copper ion transmembrane transport BP
GO:0016021 integral component of membrane CC
GO:0005375 copper ion transmembrane transporter activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed