General information for g7768.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7768 is located on chr_2: 25873401..25874008 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7768 | g7768.t2 | TSS | g7768.t2 | 25873160 | 25873160 |
| chr_2 | g7768 | g7768.t2 | isoform | g7768.t2 | 25873401 | 25874008 |
| chr_2 | g7768 | g7768.t2 | exon | g7768.t2.exon1 | 25873401 | 25874008 |
| chr_2 | g7768 | g7768.t2 | cds | g7768.t2.CDS1 | 25873547 | 25874008 |
| chr_2 | g7768 | g7768.t2 | TTS | g7768.t2 | 25874055 | 25874055 |
Sequences
>g7768.t2 Gene=g7768 Length=608
AAAAGGATTTAATTCGAACGCAAGAAGCTGAATCTAAAAAGTATATCGAGCCAACAATTG
GTCCAGCAGCAACAACATCTTCAAATTATTACAAAGAACAGAAATCAAAAAATCCTTTAA
AAATATGGAAAGTTGGAGATAAATGTATGGCTCGTGATGCGACAAACGGACAATATTATG
AAGCAACAATTGAATCAATTAGTGACGATGGTGATGCTCAAGTTATTTTCGATGCATATC
AAAATCGCGGTCAATCTCATGTCAAAGATTTAAAAGAGTACAAAGTGCGAGTTGAAGTAT
TTTCATCTGCAAATAGCCTGAAGCGATCGAAAGCAGCTCGACCTAATCATAAAGAATATT
TGAAAAAGAAGAAACTAAAGAAGCAAGCTCGATTAACAGAGTTGGAAGAGGAACGTGAGA
AAGAGAAGAACAAATGGTTAAATTTCAATAACAAAACTAATAAGAAATCGATTAACAAAC
AGCAATCTATATTTCAATCACCTGAATTTGGTCGAGTTGGTATCGGCACTTTAAAAACCA
ATGCAAATGATGTTCCACTTCCCAATAATTTTCAAGCTTCTCGCGATATTCATAAGCGTA
AAATGTAA
>g7768.t2 Gene=g7768 Length=153
MARDATNGQYYEATIESISDDGDAQVIFDAYQNRGQSHVKDLKEYKVRVEVFSSANSLKR
SKAARPNHKEYLKKKKLKKQARLTELEEEREKEKNKWLNFNNKTNKKSINKQQSIFQSPE
FGRVGIGTLKTNANDVPLPNNFQASRDIHKRKM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g7768.t2 | CDD | cd04508 | TUDOR | 1 | 44 | 4.85222E-6 |
| 2 | g7768.t2 | Coils | Coil | Coil | 69 | 103 | - |
| 1 | g7768.t2 | Gene3D | G3DSA:2.30.30.140 | - | 1 | 45 | 2.0E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
