Gene loci information

Transcript annotation

  • This transcript has been annotated as ArfGAP with SH3 domain, ANK repeat and PH domain-containing protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7777 g7777.t3 isoform g7777.t3 25908028 25909019
chr_2 g7777 g7777.t3 exon g7777.t3.exon1 25908028 25908085
chr_2 g7777 g7777.t3 cds g7777.t3.CDS1 25908029 25908085
chr_2 g7777 g7777.t3 exon g7777.t3.exon2 25908163 25908325
chr_2 g7777 g7777.t3 cds g7777.t3.CDS2 25908163 25908325
chr_2 g7777 g7777.t3 exon g7777.t3.exon3 25908387 25908727
chr_2 g7777 g7777.t3 cds g7777.t3.CDS3 25908387 25908727
chr_2 g7777 g7777.t3 exon g7777.t3.exon4 25908801 25909019
chr_2 g7777 g7777.t3 cds g7777.t3.CDS4 25908801 25908929
chr_2 g7777 g7777.t3 TSS g7777.t3 NA NA
chr_2 g7777 g7777.t3 TTS g7777.t3 NA NA

Sequences

>g7777.t3 Gene=g7777 Length=781
ACACTTGAATTTGATCGCGATGGATTGACAAAGCTGAAAAAAGCGGCAAAAGCAATACAC
AATAGCGGTAACATTCATGTGGAGAATGAGATGTGTTTAGTTCGTGCATTAGAAAGATTA
GGAACTGTAGCGTTATCAAAAGAAGAACCAGATATTGGAGCAGCATTCCTGAAATTCTCT
GTTGTCACAAAAGAGCTGTCAGCTCTGATGAAGACCTTGATGCAAAATATTAGTAATGTC
ATAATGTTCCCAGTAGACTCACTTCTCAAATCAGAGTTACGCGGTGTTAAAGGTGAAATG
AAAAGACCATTCGATAAAGCTGCCAAAGACTTTGACACAAAATATATAAAAATCGAAAAG
GAAAGAAAAGCACAAGCCAAAGAAGTAGGCATGATACGCACAGAAATATCAGCAGCAGAA
ATTGCTGAAGAGATGGAAAAGGAACGGCGCGTATTTCAATTGCAAATGTGCGAATATCTC
ATCAAGTTTAATGAAATCAAAACCAAAAAAGGCATTGAATTGCTGCAACATTTAGTTGAA
TATTATCATGCTCAGAATAATTATTTTAAGGATGGTCTCAAAACAATTGCTCATTTTGGA
ACATACATTGAAGACTTAAGTATGAAATTACAAGCAATTAGGCAGAAGCAGGATGAAGAA
AAGAAAAAACTTATTGAATTAAGAACCCTTCTAAGAAGTACTCCCGATTTTGATAGAGTT
GAAAATGTCGTAACAGACAAGGGCACAGCTTATAGTCTCCATCAGCTACAGGGCGATAAA
A

>g7777.t3 Gene=g7777 Length=230
MCLVRALERLGTVALSKEEPDIGAAFLKFSVVTKELSALMKTLMQNISNVIMFPVDSLLK
SELRGVKGEMKRPFDKAAKDFDTKYIKIEKERKAQAKEVGMIRTEISAAEIAEEMEKERR
VFQLQMCEYLIKFNEIKTKKGIELLQHLVEYYHAQNNYFKDGLKTIAHFGTYIEDLSMKL
QAIRQKQDEEKKKLIELRTLLRSTPDFDRVENVVTDKGTAYSLHQLQGDK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g7777.t3 CDD cd07604 BAR_ASAPs 3 176 7.50174E-98
6 g7777.t3 Coils Coil Coil 173 200 -
5 g7777.t3 Gene3D G3DSA:1.20.1270.60 Arfaptin 2 207 4.9E-60
2 g7777.t3 PANTHER PTHR45854 ASAP FAMILY MEMBER 1 230 2.5E-113
3 g7777.t3 PANTHER PTHR45854:SF3 ARFGAP WITH SH3 DOMAIN, ANK REPEAT AND PH DOMAIN-CONTAINING PROTEIN 1 230 2.5E-113
1 g7777.t3 Pfam PF16746 BAR domain of APPL family 17 194 8.8E-24
4 g7777.t3 SUPERFAMILY SSF103657 BAR/IMD domain-like 3 198 3.31E-47

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0043547 positive regulation of GTPase activity BP
GO:0005096 GTPase activator activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed