Gene loci information

Transcript annotation

  • This transcript has been annotated as ArfGAP with SH3 domain, ANK repeat and PH domain-containing protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7777 g7777.t5 isoform g7777.t5 25908387 25925006
chr_2 g7777 g7777.t5 exon g7777.t5.exon1 25908387 25908727
chr_2 g7777 g7777.t5 cds g7777.t5.CDS1 25908389 25908727
chr_2 g7777 g7777.t5 TTS g7777.t5 25908592 25908592
chr_2 g7777 g7777.t5 exon g7777.t5.exon2 25908801 25909019
chr_2 g7777 g7777.t5 cds g7777.t5.CDS2 25908801 25909019
chr_2 g7777 g7777.t5 exon g7777.t5.exon3 25917766 25917853
chr_2 g7777 g7777.t5 cds g7777.t5.CDS3 25917766 25917789
chr_2 g7777 g7777.t5 exon g7777.t5.exon4 25924515 25925006
chr_2 g7777 g7777.t5 TSS g7777.t5 25925006 25925006

Sequences

>g7777.t5 Gene=g7777 Length=1140
AGTTGAGGAGAGGTAGTCAATGTGTAAAGAGCGTTTAAAATTTTCATTTAATTGCACTTT
ACTGTATTTATTAATATTTAATCAAAAAGTGAGAGACAAAATCGCATTTGTAATTAACGC
GAGATTGATTAATTCATAAGTGCAACAAAAGCATTCATTTGAAGCCTCCTAAGCTCAATA
ATAGAAAATAAATTTGCAAAAAAGAGCAAAAGAAGAAAAAAATTATCGAAGAGGAGGAGA
AAAATTCTTTTTTTCCGTAAATCTATCCAGTGTTTGTGTAAAAAAAGCAAGTATAAAGAG
TAAGAATCAAGATGATTTTAAAGCAAAAACCTATTTAAATTATGATGTGAAAGATATTGC
AAAATAAAGAAAATATTTAACAGAATATTTAATAAATTAATTGTGCATATTGTGTGGAAA
ATAAGTAGAAGAAAAAAGTCATCTTTAGTTAAAATATATTTTGTGTGAGCGAGAGTAAAA
AAAGCAAAGCAAATAAAACCGAAAAGTCGATAAAAGAAAGGTATAAACACTAGAAATAAA
AAAAATATTTTAATAGATGTTTACATTATTTCTGCCAAGAACACTTGAATTTGATCGCGA
TGGATTGACAAAGCTGAAAAAAGCGGCAAAAGCAATACACAATAGCGGTAACATTCATGT
GGAGAATGAGATGTGTTTAGTTCGTGCATTAGAAAGATTAGGAACTGTAGCGTTATCAAA
AGAAGAACCAGATATTGGAGCAGCATTCCTGAAATTCTCTGTTGTCACAAAAGAGCTGTC
AGCTCTGATGAAGACCTTGATGCAAAATATTAGTAATGTCATAATGTTCCCAGTAGACTC
ACTTCTCAAATCAGAGTTACGCGGTGTTAAAGGTGAAATGAAAAGACCATTCGATAAAGC
TGCCAAAGACTTTGACACAAAATATATAAAAATCGAAAAGGAAAGAAAAGCACAAGCCAA
AGAAGTAGGCATGATACGCACAGAAATATCAGCAGCAGAAATTGCTGAAGAGATGGAAAA
GGAACGGCGCGTATTTCAATTGCAAATGTGCGAATATCTCATCAAGTTTAATGAAATCAA
AACCAAAAAAGGCATTGAATTGCTGCAACATTTAGTTGAATATTATCATGCTCAGAATAA

>g7777.t5 Gene=g7777 Length=194
MFTLFLPRTLEFDRDGLTKLKKAAKAIHNSGNIHVENEMCLVRALERLGTVALSKEEPDI
GAAFLKFSVVTKELSALMKTLMQNISNVIMFPVDSLLKSELRGVKGEMKRPFDKAAKDFD
TKYIKIEKERKAQAKEVGMIRTEISAAEIAEEMEKERRVFQLQMCEYLIKFNEIKTKKGI
ELLQHLVEYYHAQN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g7777.t5 CDD cd07604 BAR_ASAPs 9 194 0
5 g7777.t5 Gene3D G3DSA:1.20.1270.60 Arfaptin 6 194 0
2 g7777.t5 PANTHER PTHR45854 ASAP FAMILY MEMBER 8 194 0
3 g7777.t5 PANTHER PTHR45854:SF3 ARFGAP WITH SH3 DOMAIN, ANK REPEAT AND PH DOMAIN-CONTAINING PROTEIN 8 194 0
1 g7777.t5 Pfam PF16746 BAR domain of APPL family 16 193 0
4 g7777.t5 SUPERFAMILY SSF103657 BAR/IMD domain-like 7 193 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0043547 positive regulation of GTPase activity BP
GO:0005096 GTPase activator activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values