General information for g778.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Lysophospholipid acyltransferase 5.
Parent gene
- The parent gene g778 is located on chr_3: 5973327..5976148 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g778 | g778.t1 | TSS | g778.t1 | 5973094 | 5973094 |
| chr_3 | g778 | g778.t1 | isoform | g778.t1 | 5973327 | 5975182 |
| chr_3 | g778 | g778.t1 | exon | g778.t1.exon1 | 5973327 | 5973399 |
| chr_3 | g778 | g778.t1 | cds | g778.t1.CDS1 | 5973327 | 5973399 |
| chr_3 | g778 | g778.t1 | exon | g778.t1.exon2 | 5973538 | 5973780 |
| chr_3 | g778 | g778.t1 | cds | g778.t1.CDS2 | 5973538 | 5973780 |
| chr_3 | g778 | g778.t1 | exon | g778.t1.exon3 | 5973895 | 5974392 |
| chr_3 | g778 | g778.t1 | cds | g778.t1.CDS3 | 5973895 | 5974392 |
| chr_3 | g778 | g778.t1 | exon | g778.t1.exon4 | 5974454 | 5974749 |
| chr_3 | g778 | g778.t1 | cds | g778.t1.CDS4 | 5974454 | 5974749 |
| chr_3 | g778 | g778.t1 | exon | g778.t1.exon5 | 5974817 | 5975182 |
| chr_3 | g778 | g778.t1 | cds | g778.t1.CDS5 | 5974817 | 5975182 |
| chr_3 | g778 | g778.t1 | TTS | g778.t1 | 5976144 | 5976144 |
Sequences
>g778.t1 Gene=g778 Length=1476
ATGTTATCATACTTGTCAGAGACATTAGGTGCTAGCGAAGCAGCTCTCCGTCTTTTATTC
TCTGTACTTTTTGCTTATCCTATCGTAATTTTCTATCGTCTGTTTCTACATAATAATGCG
AGCGTTGCAAAAAAGGAAACTAATCACTTGGTTTTTACTATATGCGGTATACTGATATGC
ATATTCAATTATGGCTTTGAGGTCCAGCATTCAATTTTAAGTGTAACTTTTACATACATC
ATCATTAATCTTTTGTACAAGTCTAAATATCTTGTGCCGGTATCGTTTATTTTTCACATG
TCGTATCTATTAATAGGCTATTATAAGACATCAACAGAAAATTATGATATATGTTGGACA
ATGGCTCACTGTGTAATGGTACTTCATTTAATTGGTTTAACTTTTGATGTAAACGATAGT
GTAAAAAAACCAGAAGTGCTAGGCATCACCGATTCACGGCCCTATAAAATTCCGTCTCTA
CTCGAAGTGTTTGGTTTTGCATATTTTCCGCCAACTGTCATCATTGGACCACAATTTTCA
TTTAAACGTTATTATGAGTTTACTAATGGAAAATATGATGTAGGAAAAGATAATTTCAAG
CATGGATTCTTGAGATGTGCAACTGGTCTCTTGTACTTGGGAATCTTTCAACTACTCTCA
ATTGTGATTGTTCCTGATAGTCTCTTCTTATCTGATGAATTCGGAGATAAAAACTTTCTA
TATAAAGTGTTTTTGCTAAGTCTTTGGGGACGTGCGAGCTTATACAAATACATCTCTTGT
TGGATATTATCAGAAGGAGCTGCAATTTGTGCAGGTCTTACATTTGTTTCGCGCGATGAG
AAAACAGGCATTGAAGATTGGACAGGATGCACAAATATTCGTTTAAGAATATTCGAAAAC
ACTTACAAATTTGGTGATTATGTTGCATCATTTAACGTACAGACTAATTTATGGGTATTC
AATTATGTATACAAGCGATTGAAGTTTCTTAACAATAAGAACATAAGTCATGTTTCCGCT
TTGTTCTTTTTGGCTGTATGGCATGGATTTCATTCTGGATATTATATTACATTCTTATTT
GAGTTTATGCTTATTCATTTTGAAAAAGAGATCGAGCCTGTTTTCAAGAAAAATCCAAAA
CTTCAAGCATTTTTACAACAAGGATTTATGCCAATTGTTGTTTGGTTGATACTAAAGACA
TACACTTTTGTAATTGCTGGCTACTGTCTAATTCCGTTTGTCTATTTGAGCTTCTATAAA
TGGTGGCCTATTTACAAGAAATTTTATTTTTTCGGGCACATTGTTATTTTTCCTATGTCA
ATAGTATGGAAACCTCTCATTGTCAAAATTGTCAAAATTTATTTTCCCTTGGACAAAGAA
GATAAGAAACCCGAAAATGTTGGAAATTCTGAGAATACAATATCAAGTAATAATCAAAAT
AATGACAGTAGCATTCAGCATGATAAAGTCAATTAA
>g778.t1 Gene=g778 Length=491
MLSYLSETLGASEAALRLLFSVLFAYPIVIFYRLFLHNNASVAKKETNHLVFTICGILIC
IFNYGFEVQHSILSVTFTYIIINLLYKSKYLVPVSFIFHMSYLLIGYYKTSTENYDICWT
MAHCVMVLHLIGLTFDVNDSVKKPEVLGITDSRPYKIPSLLEVFGFAYFPPTVIIGPQFS
FKRYYEFTNGKYDVGKDNFKHGFLRCATGLLYLGIFQLLSIVIVPDSLFLSDEFGDKNFL
YKVFLLSLWGRASLYKYISCWILSEGAAICAGLTFVSRDEKTGIEDWTGCTNIRLRIFEN
TYKFGDYVASFNVQTNLWVFNYVYKRLKFLNNKNISHVSALFFLAVWHGFHSGYYITFLF
EFMLIHFEKEIEPVFKKNPKLQAFLQQGFMPIVVWLILKTYTFVIAGYCLIPFVYLSFYK
WWPIYKKFYFFGHIVIFPMSIVWKPLIVKIVKIYFPLDKEDKKPENVGNSENTISSNNQN
NDSSIQHDKVN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g778.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 463 | 491 | - |
| 14 | g778.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 491 | - |
| 2 | g778.t1 | PANTHER | PTHR13906:SF14 | LYSOPHOSPHOLIPID ACYLTRANSFERASE 5 | 2 | 451 | 1.7E-143 |
| 3 | g778.t1 | PANTHER | PTHR13906 | PORCUPINE | 2 | 451 | 1.7E-143 |
| 1 | g778.t1 | Pfam | PF03062 | MBOAT, membrane-bound O-acyltransferase family | 105 | 405 | 1.2E-43 |
| 25 | g778.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 13 | - |
| 32 | g778.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 14 | 35 | - |
| 19 | g778.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 36 | 46 | - |
| 28 | g778.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 47 | 66 | - |
| 27 | g778.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 67 | 85 | - |
| 37 | g778.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 86 | 105 | - |
| 21 | g778.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 106 | 116 | - |
| 31 | g778.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 117 | 137 | - |
| 26 | g778.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 138 | 156 | - |
| 35 | g778.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 157 | 181 | - |
| 18 | g778.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 182 | 201 | - |
| 33 | g778.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 202 | 224 | - |
| 24 | g778.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 225 | 253 | - |
| 38 | g778.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 254 | 276 | - |
| 17 | g778.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 277 | 303 | - |
| 30 | g778.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 304 | 324 | - |
| 22 | g778.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 325 | 343 | - |
| 29 | g778.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 344 | 367 | - |
| 20 | g778.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 368 | 387 | - |
| 36 | g778.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 388 | 416 | - |
| 23 | g778.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 417 | 427 | - |
| 34 | g778.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 428 | 447 | - |
| 16 | g778.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 448 | 491 | - |
| 6 | g778.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 15 | 37 | - |
| 4 | g778.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 49 | 71 | - |
| 8 | g778.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 91 | 108 | - |
| 12 | g778.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 115 | 137 | - |
| 7 | g778.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 159 | 181 | - |
| 10 | g778.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 202 | 224 | - |
| 13 | g778.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 254 | 276 | - |
| 11 | g778.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 335 | 357 | - |
| 9 | g778.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 394 | 416 | - |
| 5 | g778.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 429 | 451 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K13515 (lysophospholipid acyltransferase 5 [EC:2.3.1.23 2.3.1.-])
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
