General information for g778.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Lysophospholipid acyltransferase 5.
Parent gene
- The parent gene g778 is located on chr_3: 5973327..5976148 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g778 | g778.t5 | TSS | g778.t5 | 5973094 | 5973094 |
| chr_3 | g778 | g778.t5 | isoform | g778.t5 | 5973327 | 5976148 |
| chr_3 | g778 | g778.t5 | exon | g778.t5.exon1 | 5973327 | 5973399 |
| chr_3 | g778 | g778.t5 | exon | g778.t5.exon2 | 5973538 | 5973766 |
| chr_3 | g778 | g778.t5 | exon | g778.t5.exon3 | 5973895 | 5974396 |
| chr_3 | g778 | g778.t5 | cds | g778.t5.CDS1 | 5973939 | 5974396 |
| chr_3 | g778 | g778.t5 | exon | g778.t5.exon4 | 5974454 | 5974749 |
| chr_3 | g778 | g778.t5 | cds | g778.t5.CDS2 | 5974454 | 5974478 |
| chr_3 | g778 | g778.t5 | exon | g778.t5.exon5 | 5974817 | 5976148 |
| chr_3 | g778 | g778.t5 | TTS | g778.t5 | 5977098 | 5977098 |
Sequences
>g778.t5 Gene=g778 Length=2432
ATGTTATCATACTTGTCAGAGACATTAGGTGCTAGCGAAGCAGCTCTCCGTCTTTTATTC
TCTGTACTTTTTGCTTATCCTATCGTAATTTTCTATCGTCTGTTTCTACATAATAATGCG
AGCGTTGCAAAAAAGGAAACTAATCACTTGGTTTTTACTATATGCGGTATACTGATATGC
ATATTCAATTATGGCTTTGAGGTCCAGCATTCAATTTTAAGTGTAACTTTTACATACATC
ATCATTAATCTTTTGTACAAGTCTAAATATCTTGTGCCGGTATCGTTTATTTTTCACATG
TCGCTATTATAAGACATCAACAGAAAATTATGATATATGTTGGACAATGGCTCACTGTGT
AATGGTACTTCATTTAATTGGTTTAACTTTTGATGTAAACGATAGTGTAAAAAAACCAGA
AGTGCTAGGCATCACCGATTCACGGCCCTATAAAATTCCGTCTCTACTCGAAGTGTTTGG
TTTTGCATATTTTCCGCCAACTGTCATCATTGGACCACAATTTTCATTTAAACGTTATTA
TGAGTTTACTAATGGAAAATATGATGTAGGAAAAGATAATTTCAAGCATGGATTCTTGAG
ATGTGCAACTGGTCTCTTGTACTTGGGAATCTTTCAACTACTCTCAATTGTGATTGTTCC
TGATAGTCTCTTCTTATCTGATGAATTCGGAGATAAAAACTTTCTATATAAAGTGTTTTT
GCTAAGTCTTTGGGGACGTGCGAGCTTATACAAATACATCTCTTGTTGGATATTATCAGA
AGGAGCTGCAATTTGTGCAGGTTTGTCTTACATTTGTTTCGCGCGATGAGAAAACAGGCA
TTGAAGATTGGACAGGATGCACAAATATTCGTTTAAGAATATTCGAAAACACTTACAAAT
TTGGTGATTATGTTGCATCATTTAACGTACAGACTAATTTATGGGTATTCAATTATGTAT
ACAAGCGATTGAAGTTTCTTAACAATAAGAACATAAGTCATGTTTCCGCTTTGTTCTTTT
TGGCTGTATGGCATGGATTTCATTCTGGATATTATATTACATTCTTATTTGAGTTTATGC
TTATTCATTTTGAAAAAGAGATCGAGCCTGTTTTCAAGAAAAATCCAAAACTTCAAGCAT
TTTTACAACAAGGATTTATGCCAATTGTTGTTTGGTTGATACTAAAGACATACACTTTTG
TAATTGCTGGCTACTGTCTAATTCCGTTTGTCTATTTGAGCTTCTATAAATGGTGGCCTA
TTTACAAGAAATTTTATTTTTTCGGGCACATTGTTATTTTTCCTATGTCAATAGTATGGA
AACCTCTCATTGTCAAAATTGTCAAAATTTATTTTCCCTTGGACAAAGAAGATAAGAAAC
CCGAAAATGTTGGAAATTCTGAGAATACAATATCAAGTAATAATCAAAATAATGACAGTA
GCATTCAGCATGATAAAGTCAATTAACGTGATTGTGAAAAACGTGGTGCATGAAAATTTC
GTGCTTATGTACGCGTGTGACTTTCTTTACCGACTATTTGAAAGACAATATTTATACGAA
TTGATTGAAAAAAAAAACAAATGTTGAAATTATAATCGTTGCAAGTAGATGTTTTTCACC
CACACTATAAGAGAACATCTTTAAACTTCTTTGAGAATTAAGGACAAAAAAAAGCGCTTT
AATAATTTTTAAATTAACTACTATATCAACTCCATTTCTTTAAAAAATTTTAAAAATATT
AAAAAGTAGTGAACATGCATGAAATTATGTATCTAGTCAAATACATGAGGAATCGATATT
CATCTCCTCCTTTTTTCTATTTTCTCTTCATTTCCCTTTTCCTTTCAATCTGCGACATAT
ATACATAGTCGTAAAGTCAATTACTGAATTATTAAATTTGATTAATAATGTAAGGAAATA
ATAAGTGAGTGAAAGAGTAGGAATTGCCATAGAGATAAAAGTTTTAAAACATTTTTTTTC
TTTTTAAATGTCAAATAACTAGAACATACACTAAAACAAATGAAAATGTTTAAAGGGTTG
AAGATGGTTAATTAATTTTTTTAGAAATTCAATACATAGCAAATATGTAACATTTTATTC
TGTCCCGATAAATTATCATAGACTTTTCTTAATAACTTTCGAAAATATGCATAATCTCTT
TAAATAATCAGTTTACTTAACTTTCATGAATTTCATTGCTAAATTTACAACTTTATAATT
AAGTTTCTTATATTCAAAAGACATTCTATTGATTTTCTTCTCTCTAATAACCTTTCATTA
TAATATGACATGAGAAAATTATCACATGTTATCCGGCCACTTTTTATATTGAATTCATGA
TGGATCAACCTAAGTATCACGTACTATTTAGGAAAAACAAGTAAAAGTTCGCAGAATAAA
TTTTGAATTTCAAAAAATATTGCATCTCAAAA
>g778.t5 Gene=g778 Length=160
MAHCVMVLHLIGLTFDVNDSVKKPEVLGITDSRPYKIPSLLEVFGFAYFPPTVIIGPQFS
FKRYYEFTNGKYDVGKDNFKHGFLRCATGLLYLGIFQLLSIVIVPDSLFLSDEFGDKNFL
YKVFLLSLWGRASLYKYISCWILSEGAAICAGLSYICFAR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g778.t5 | PANTHER | PTHR13906:SF14 | LYSOPHOSPHOLIPID ACYLTRANSFERASE 5 | 1 | 155 | 1.3E-42 |
| 3 | g778.t5 | PANTHER | PTHR13906 | PORCUPINE | 1 | 155 | 1.3E-42 |
| 1 | g778.t5 | Pfam | PF03062 | MBOAT, membrane-bound O-acyltransferase family | 34 | 155 | 8.8E-13 |
| 12 | g778.t5 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 19 | - |
| 13 | g778.t5 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 3 | - |
| 14 | g778.t5 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 4 | 15 | - |
| 18 | g778.t5 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 16 | 19 | - |
| 10 | g778.t5 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 20 | 42 | - |
| 16 | g778.t5 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 43 | 61 | - |
| 9 | g778.t5 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 62 | 81 | - |
| 17 | g778.t5 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 82 | 104 | - |
| 11 | g778.t5 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 105 | 133 | - |
| 15 | g778.t5 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 134 | 158 | - |
| 8 | g778.t5 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 159 | 160 | - |
| 7 | g778.t5 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 16 | - |
| 5 | g778.t5 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 39 | 61 | - |
| 4 | g778.t5 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 82 | 104 | - |
| 6 | g778.t5 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 137 | 159 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
