General information for g7782.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Vesicular glutamate transporter 1.
Parent gene
- The parent gene g7782 is located on chr_2: 26091616..26092124 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7782 | g7782.t1 | TTS | g7782.t1 | 26086139 | 26086139 |
| chr_2 | g7782 | g7782.t1 | isoform | g7782.t1 | 26086523 | 26091709 |
| chr_2 | g7782 | g7782.t1 | exon | g7782.t1.exon1 | 26086523 | 26086735 |
| chr_2 | g7782 | g7782.t1 | cds | g7782.t1.CDS1 | 26086523 | 26086735 |
| chr_2 | g7782 | g7782.t1 | exon | g7782.t1.exon2 | 26086796 | 26086845 |
| chr_2 | g7782 | g7782.t1 | cds | g7782.t1.CDS2 | 26086796 | 26086845 |
| chr_2 | g7782 | g7782.t1 | exon | g7782.t1.exon3 | 26086915 | 26087217 |
| chr_2 | g7782 | g7782.t1 | cds | g7782.t1.CDS3 | 26086915 | 26087217 |
| chr_2 | g7782 | g7782.t1 | exon | g7782.t1.exon4 | 26087275 | 26087319 |
| chr_2 | g7782 | g7782.t1 | cds | g7782.t1.CDS4 | 26087275 | 26087319 |
| chr_2 | g7782 | g7782.t1 | exon | g7782.t1.exon5 | 26087387 | 26087653 |
| chr_2 | g7782 | g7782.t1 | cds | g7782.t1.CDS5 | 26087387 | 26087653 |
| chr_2 | g7782 | g7782.t1 | exon | g7782.t1.exon6 | 26087726 | 26087830 |
| chr_2 | g7782 | g7782.t1 | cds | g7782.t1.CDS6 | 26087726 | 26087830 |
| chr_2 | g7782 | g7782.t1 | exon | g7782.t1.exon7 | 26088007 | 26088058 |
| chr_2 | g7782 | g7782.t1 | cds | g7782.t1.CDS7 | 26088007 | 26088058 |
| chr_2 | g7782 | g7782.t1 | exon | g7782.t1.exon8 | 26088125 | 26088425 |
| chr_2 | g7782 | g7782.t1 | cds | g7782.t1.CDS8 | 26088125 | 26088425 |
| chr_2 | g7782 | g7782.t1 | exon | g7782.t1.exon9 | 26088496 | 26088597 |
| chr_2 | g7782 | g7782.t1 | cds | g7782.t1.CDS9 | 26088496 | 26088597 |
| chr_2 | g7782 | g7782.t1 | exon | g7782.t1.exon10 | 26091621 | 26091709 |
| chr_2 | g7782 | g7782.t1 | cds | g7782.t1.CDS10 | 26091621 | 26091709 |
| chr_2 | g7782 | g7782.t1 | TSS | g7782.t1 | 26092124 | 26092124 |
Sequences
>g7782.t1 Gene=g7782 Length=1527
ATGAGTGCCAACAAGAAAGATCCAACAGTGATATATAATAATAATTCTGCCATAATGCAA
TCAGTTGAAAATGGCAATGATGATGATGATGTCACTGAGACAAAACCATTCTGGCGAAAG
CGACGTTATCTCGTCGTACTAATGGCATTCTTTGGCTTCTTCAACGTTTACTCGCTTCGT
GTCAATTTAAGTGTTGCTATAGTGTCAATGACTGAAATAAGAGAAATTCATCATGAAAAT
AATACTGTGACGAAGGAGCAATATTTCGATTGGGATTCACAGCAAAAGGGACTTGTTTTG
AGTTCATTTTTTTATGGCTACATCACTACACAATTTATTGGTGGTTTAGTTGCTGCAAAA
ATTGGTGGAAATCGAATCTTTGGCATTGGCATTGGTGCAACAGCTATTTTGACATTGCTC
ACACCGCTTGCAGCAAAAACCAACTTTTACCTTCTCTTGGCTGTTCGTATAATTGAAGGA
GTTTTTGAAGGTGTCACCTTTCCTACTATTCATGCGGTTTGGAGCAAATGGAGTCCACCT
TTAGAGAGATCTCGAATGGCCAGTATAGCTTTTGCTGGTAACTATGCAGGCACTGTTATC
GCAATGCCTGCTTCTGGGTTATTAGCAGCAACATATGGTTGGGAATCAGTATTTTATGTT
TTTGGAGCAATTGGTTGTTTATGGCTTGTACTTTGGATGATAATAGTTCGAAGAAGTCCA
GAAGAAGATCCGTTCATAAGTGAAGAAGAAAAGAATTATATTGTCAAAAAGCTCGGTCGA
CGTGAAGATATTAAAATAAATCCACCATGGAAAGAAATCTTTAAATCGCCTGCTGTATGG
GCGATTGTTGCATCACATTGTGCTGAAAATTGGGGATTTTATACTCTCTTGACTCAGCTT
CCGACATTCTTGAGTGATGTCTTCAACTTTCAATTACAAAAGACTGGATTTCTCTCAGCA
GTTCCTTATTTAACAATGGGCATTTTACTTGGTGTCTCAGGATATCTTGCTGACTGGTGT
CAAATTAAAGGCTATTTGACAACAACACAAGTTCGTCGCTATTTTAATTGCCTCGCATTT
CTTGCTCAAACGATTTTCATGCTTCTTGCCGCATTTCTTCTCCATCCAACAACTAGTATG
GTTTGCATCACAATTGCTGTAGGACTTGGAGCTTTCGCATGGTCAGGTTTTGTTGTAAAC
CATTTAGATATTGCACCACAATATGCGAGTATATTGATGGGTATTGGAAATACTTTTGCA
ACAATTCCCGGAATTGTTTCACCGATATTGACTGGCTTCATTGTCAAGGATAAAAGTGTC
GACTCTTGGAAAATTGTCTTCTACATCAGTGCAGGAATATATTTGTTTGGCTGTTTATTT
TATTGGTTTTATGCATCAGGTGAAGTACAGCCATGGGCGGTTGTTCGTACACCAACACAT
GAAACAAATCGTAGTGAAATTGAGAAAAATGGAAAGCCTAAAGGCCATGCATATACGAAT
GAAGGTATTGAACTGAAAGACGAGTAG
>g7782.t1 Gene=g7782 Length=508
MSANKKDPTVIYNNNSAIMQSVENGNDDDDVTETKPFWRKRRYLVVLMAFFGFFNVYSLR
VNLSVAIVSMTEIREIHHENNTVTKEQYFDWDSQQKGLVLSSFFYGYITTQFIGGLVAAK
IGGNRIFGIGIGATAILTLLTPLAAKTNFYLLLAVRIIEGVFEGVTFPTIHAVWSKWSPP
LERSRMASIAFAGNYAGTVIAMPASGLLAATYGWESVFYVFGAIGCLWLVLWMIIVRRSP
EEDPFISEEEKNYIVKKLGRREDIKINPPWKEIFKSPAVWAIVASHCAENWGFYTLLTQL
PTFLSDVFNFQLQKTGFLSAVPYLTMGILLGVSGYLADWCQIKGYLTTTQVRRYFNCLAF
LAQTIFMLLAAFLLHPTTSMVCITIAVGLGAFAWSGFVVNHLDIAPQYASILMGIGNTFA
TIPGIVSPILTGFIVKDKSVDSWKIVFYISAGIYLFGCLFYWFYASGEVQPWAVVRTPTH
ETNRSEIEKNGKPKGHAYTNEGIELKDE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 30 | g7782.t1 | CDD | cd17318 | MFS_SLC17 | 47 | 465 | 0.0 |
| 6 | g7782.t1 | Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 35 | 247 | 3.1E-43 |
| 5 | g7782.t1 | Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 267 | 470 | 2.2E-34 |
| 41 | g7782.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 484 | 508 | - |
| 2 | g7782.t1 | PANTHER | PTHR11662 | SOLUTE CARRIER FAMILY 17 | 38 | 476 | 8.8E-200 |
| 3 | g7782.t1 | PANTHER | PTHR11662:SF437 | GH23975P | 38 | 476 | 8.8E-200 |
| 1 | g7782.t1 | Pfam | PF07690 | Major Facilitator Superfamily | 49 | 428 | 2.6E-61 |
| 10 | g7782.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 42 | - |
| 22 | g7782.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 43 | 60 | - |
| 14 | g7782.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 61 | 97 | - |
| 20 | g7782.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 98 | 119 | - |
| 12 | g7782.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 120 | 125 | - |
| 25 | g7782.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 126 | 145 | - |
| 16 | g7782.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 146 | 150 | - |
| 24 | g7782.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 151 | 174 | - |
| 9 | g7782.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 175 | 185 | - |
| 26 | g7782.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 186 | 210 | - |
| 15 | g7782.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 211 | 215 | - |
| 19 | g7782.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 216 | 236 | - |
| 8 | g7782.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 237 | 316 | - |
| 21 | g7782.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 317 | 337 | - |
| 18 | g7782.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 338 | 352 | - |
| 29 | g7782.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 353 | 374 | - |
| 11 | g7782.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 375 | 380 | - |
| 28 | g7782.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 381 | 402 | - |
| 17 | g7782.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 403 | 407 | - |
| 23 | g7782.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 408 | 433 | - |
| 7 | g7782.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 434 | 444 | - |
| 27 | g7782.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 445 | 464 | - |
| 13 | g7782.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 465 | 508 | - |
| 42 | g7782.t1 | ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 44 | 469 | 22.692 |
| 4 | g7782.t1 | SUPERFAMILY | SSF103473 | MFS general substrate transporter | 26 | 465 | 1.44E-83 |
| 31 | g7782.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 43 | 61 | - |
| 32 | g7782.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 97 | 119 | - |
| 37 | g7782.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 126 | 145 | - |
| 34 | g7782.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 188 | 210 | - |
| 38 | g7782.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 217 | 236 | - |
| 36 | g7782.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 315 | 337 | - |
| 39 | g7782.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 354 | 373 | - |
| 35 | g7782.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 377 | 399 | - |
| 40 | g7782.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 408 | 430 | - |
| 33 | g7782.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 445 | 467 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055085 | transmembrane transport | BP |
| GO:0022857 | transmembrane transporter activity | MF |
KEGG
Orthology
- This transcript has been annotated with K08193 (MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), other)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed