General information for g7791.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Alpha-amylase .
Parent gene
- The parent gene g7791 is located on chr_2: 26136750..26137916 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7791 | g7791.t1 | isoform | g7791.t1 | 26136750 | 26137916 |
| chr_2 | g7791 | g7791.t1 | exon | g7791.t1.exon1 | 26136750 | 26136786 |
| chr_2 | g7791 | g7791.t1 | cds | g7791.t1.CDS1 | 26136750 | 26136786 |
| chr_2 | g7791 | g7791.t1 | exon | g7791.t1.exon2 | 26136863 | 26136890 |
| chr_2 | g7791 | g7791.t1 | cds | g7791.t1.CDS2 | 26136863 | 26136890 |
| chr_2 | g7791 | g7791.t1 | exon | g7791.t1.exon3 | 26136944 | 26137008 |
| chr_2 | g7791 | g7791.t1 | cds | g7791.t1.CDS3 | 26136944 | 26137008 |
| chr_2 | g7791 | g7791.t1 | exon | g7791.t1.exon4 | 26137068 | 26137128 |
| chr_2 | g7791 | g7791.t1 | cds | g7791.t1.CDS4 | 26137068 | 26137128 |
| chr_2 | g7791 | g7791.t1 | exon | g7791.t1.exon5 | 26137196 | 26137344 |
| chr_2 | g7791 | g7791.t1 | cds | g7791.t1.CDS5 | 26137196 | 26137344 |
| chr_2 | g7791 | g7791.t1 | exon | g7791.t1.exon6 | 26137412 | 26137458 |
| chr_2 | g7791 | g7791.t1 | cds | g7791.t1.CDS6 | 26137412 | 26137458 |
| chr_2 | g7791 | g7791.t1 | exon | g7791.t1.exon7 | 26137556 | 26137679 |
| chr_2 | g7791 | g7791.t1 | cds | g7791.t1.CDS7 | 26137556 | 26137679 |
| chr_2 | g7791 | g7791.t1 | exon | g7791.t1.exon8 | 26137742 | 26137764 |
| chr_2 | g7791 | g7791.t1 | cds | g7791.t1.CDS8 | 26137742 | 26137764 |
| chr_2 | g7791 | g7791.t1 | exon | g7791.t1.exon9 | 26137824 | 26137916 |
| chr_2 | g7791 | g7791.t1 | cds | g7791.t1.CDS9 | 26137824 | 26137916 |
| chr_2 | g7791 | g7791.t1 | TSS | g7791.t1 | NA | NA |
| chr_2 | g7791 | g7791.t1 | TTS | g7791.t1 | NA | NA |
Sequences
>g7791.t1 Gene=g7791 Length=627
ATGGACAATTTAATCCACAATGGAGAATTGAAAAAAACATTATGGTTCATTTATTTGAGT
GAGAGGCTTGATATTGCTGCAGAATGTGAAAAATTCTTATCTTCGCGAGGTTTTGCTGGT
GTTCAAGTTTCTCCTCCAGCTAAAAATGTTATCGTTAGAAGTGAAAATATTTTAAAACCA
TGGTGGGAAAGATATCAACCAGTTTCTTATAAATTAGAAAAACGTTCTGGAAATGAAGCT
GCTTTTGTTGATATGGTTCGACGATGCAATGCTGTTGGTGTTCGAATTTACGTTGATATT
TTACTAAATATTATTAGTGCGACTAATGGTACAGGAACTGATGGAACTGTTGTCTCTACC
AGACGAAATTTCCCAGCTGTTCCTTATGGCAATGCGTTGTTTATAAGAATTTGTGAGCTC
GTTGGACTTCCTGATTTAAATGTTACAAGACAAAATGTTAGGCAACACTTGATTGACTAT
ATGAATCATTTAATTGATCTTAGAATTGCTGATTTTAGAGCTGATGCTATGAAACACATG
TTTCCAGAAGATCTTGATTACATGTTTTCTCGCTTGCGTAATCTCAACACAGTTCATGGT
TTTGCAGCATATCAAAAGCATTTCTAG
>g7791.t1 Gene=g7791 Length=208
MDNLIHNGELKKTLWFIYLSERLDIAAECEKFLSSRGFAGVQVSPPAKNVIVRSENILKP
WWERYQPVSYKLEKRSGNEAAFVDMVRRCNAVGVRIYVDILLNIISATNGTGTDGTVVST
RRNFPAVPYGNALFIRICELVGLPDLNVTRQNVRQHLIDYMNHLIDLRIADFRADAMKHM
FPEDLDYMFSRLRNLNTVHGFAAYQKHF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g7791.t1 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 23 | 208 | 0.0e+00 |
| 2 | g7791.t1 | PANTHER | PTHR43447 | ALPHA-AMYLASE | 20 | 206 | 0.0e+00 |
| 3 | g7791.t1 | PANTHER | PTHR43447:SF7 | ALPHA-AMYLASE | 20 | 206 | 0.0e+00 |
| 4 | g7791.t1 | PRINTS | PR00110 | Alpha-amylase signature | 61 | 78 | 0.0e+00 |
| 5 | g7791.t1 | PRINTS | PR00110 | Alpha-amylase signature | 93 | 104 | 0.0e+00 |
| 6 | g7791.t1 | PRINTS | PR00110 | Alpha-amylase signature | 169 | 180 | 0.0e+00 |
| 1 | g7791.t1 | Pfam | PF00128 | Alpha amylase, catalytic domain | 139 | 204 | 1.6e-05 |
| 8 | g7791.t1 | SMART | SM00642 | aamy | 16 | 207 | 1.6e-03 |
| 7 | g7791.t1 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 24 | 201 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0043169 | cation binding | MF |
| GO:0004556 | alpha-amylase activity | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed