Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7796 g7796.t3 isoform g7796.t3 26147699 26150089
chr_2 g7796 g7796.t3 exon g7796.t3.exon1 26147699 26147854
chr_2 g7796 g7796.t3 cds g7796.t3.CDS1 26147700 26147854
chr_2 g7796 g7796.t3 exon g7796.t3.exon2 26147988 26148292
chr_2 g7796 g7796.t3 cds g7796.t3.CDS2 26147988 26148186
chr_2 g7796 g7796.t3 exon g7796.t3.exon3 26149974 26150089
chr_2 g7796 g7796.t3 TSS g7796.t3 26150089 26150089
chr_2 g7796 g7796.t3 TTS g7796.t3 NA NA

Sequences

>g7796.t3 Gene=g7796 Length=577
AGTCGCGAGAGAGAGCTTGAAAAAAGCAGAAGGAAAATTTTATTTGAGTTAAAAAAGAAA
ATTATTTTGAGAGATGTGATGTATTAAAGAAAATATTCATATATGAAATTATTAAGATTG
TTCTTAAACAAGGCAAAAGCAGCATAAAAACGAAAAAAGATTTACTTAATGAAAAGCGTA
AAAGTTAAGAAAAAGTTAAATTAAAGAAAGAAGACACAAGTGATGATAAATGCAAAGCAC
AAAAAGGAAAAATTAAAGAAAATGAAGCAACGGCACGGAAAAATTGCTGAAAGAATTTCA
ACAATTTTTAACTATTTTACTGGTCATGATATCAGCAATTTTACGTCATATAATAAATTT
ACCAGTTTAATGTTTACAAGTGTTGACGGCTCAAGTCTCGGTATCTGTAGAATGTTGTTT
GGCATAATGATGCTTCTCGATATTACAGAGGAGCGCGGCGGGAGTGATTTGGATTTAAGA
TGGGGAGAAATTAAGGACTGTCGCTTTCCATTATTTTCATTCATAAAAGCTTTCTCGTTA
GCCAAAATGGGTCTTATTTATTTTTTAATGTGGTTAG

>g7796.t3 Gene=g7796 Length=118
MINAKHKKEKLKKMKQRHGKIAERISTIFNYFTGHDISNFTSYNKFTSLMFTSVDGSSLG
ICRMLFGIMMLLDITEERGGSDLDLRWGEIKDCRFPLFSFIKAFSLAKMGLIYFLMWL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g7796.t3 PANTHER PTHR12639 VITAMIN K-DEPENDENT GAMMA-CARBOXYLASE 26 118 1.9E-24
3 g7796.t3 PANTHER PTHR12639:SF6 VITAMIN K-DEPENDENT GAMMA-CARBOXYLASE 26 118 1.9E-24
1 g7796.t3 Pfam PF05090 Vitamin K-dependent gamma-carboxylase 61 118 1.2E-12
6 g7796.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 20 -
11 g7796.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 21 37 -
8 g7796.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 38 56 -
10 g7796.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 57 74 -
5 g7796.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 75 94 -
9 g7796.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 95 116 -
7 g7796.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 117 118 -
4 g7796.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 95 117 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008488 gamma-glutamyl carboxylase activity MF
GO:0017187 peptidyl-glutamic acid carboxylation BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed