General information for g7798.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as N-acetylgalactosaminyltransferase 4.
Parent gene
- The parent gene g7798 is located on chr_2: 26151984..26152856 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7798 | g7798.t1 | TSS | g7798.t1 | 26150717 | 26150717 |
| chr_2 | g7798 | g7798.t1 | isoform | g7798.t1 | 26151442 | 26152856 |
| chr_2 | g7798 | g7798.t1 | exon | g7798.t1.exon1 | 26151442 | 26151928 |
| chr_2 | g7798 | g7798.t1 | cds | g7798.t1.CDS1 | 26151442 | 26151928 |
| chr_2 | g7798 | g7798.t1 | exon | g7798.t1.exon2 | 26151984 | 26152060 |
| chr_2 | g7798 | g7798.t1 | cds | g7798.t1.CDS2 | 26151984 | 26152060 |
| chr_2 | g7798 | g7798.t1 | exon | g7798.t1.exon3 | 26152218 | 26152856 |
| chr_2 | g7798 | g7798.t1 | cds | g7798.t1.CDS3 | 26152218 | 26152856 |
| chr_2 | g7798 | g7798.t1 | TTS | g7798.t1 | 26153063 | 26153063 |
Sequences
>g7798.t1 Gene=g7798 Length=1203
ATGTGGACTGTTTTGTTGCGTTGTATTCATTCAATTTATCATCGTTCTCCAAGTAATTTG
CTGCATGAAATTATTCTTATCAATGATGGTAGCACATTTAATGAACTTTATGAACCATTG
CAAAAATATTTCAATGGAACTTTCGAATCAAAAGTCAAAATTCATCAAAATTTACAACGA
GAAGGATTAATTAAATCAAGAATGATTGGAGCGAGACTTGCAGAAGCAGAAGTAATAATT
TTTCTTGATTCACATATGGAAGTCACAAATTCATGGCTTCCTCCACTTCTTGAACCACTT
GTTTATTATCCCACATATGCGACTGTTCCGATTGTTGAAAGCTTAAATCATAACACATTT
GCATATGAATACATTGGCAATGGCTATCGTGGCACATTCGATTGGAATTTGAGATATCAA
TGGTTACCTCGACCGCAAAAAGATCCAGAGCATATATCAGATAATTATGAACTATCTAGT
ATGACAGGTGGTGCATATGCAATAAAAAGGGAGCATTTCTTTCATCTTGGTGGATATGAT
GAAGAGTTGAAAATATGGAATGGGCGAGTTGTAGAAGTTTGGTTTGATGATTATAAAAAA
TATTTTTATCGAAATGATCCACAAAGGTATGCAAAAATAGATGCAGGCGATTTATCTAAA
CAGTTTGAATTGAAAAAGAAATTAAAATGCAAACCATTTAAATATTTTCTTGATGTTGTC
GCTCCTGAAATGCTTGAAAGATATCCATTACAACCACAATATTTTGCTGCTGGTTCAATT
CAAAATCAAGGTCTCAATTTATGCATATCAATTGCTCATTTAGCTAAATCATATTACAAA
CCACTGTTGCTGCTTGATTGTAGTAATGACTTGAAAAATCCAATAAAGGGTTCAGATTTT
ATTCTCACATTCGAAAGAAGTATTAAACATAATGATACAAACGATCAATGTTTAAATGGA
AATACTTTAGCATTATCAAACTGCCATCATCAAGGTAACAATCAACATTGGATTTTTAAT
ATCACTACTAGACAGATCAATTATCGATATAGCGAAAAATGTTTGAAAGGTGTAAGATTT
AATGAAACAATTGAGTTGGAAGAGTGCAATAACGCATCGCTTTTGCAAAAATGGACATGG
GGTTTTGAAAATGTGACAGCTCTATCAAATTGGCAGAACACTGGAATAAAGATGCATTAT
TGA
>g7798.t1 Gene=g7798 Length=400
MWTVLLRCIHSIYHRSPSNLLHEIILINDGSTFNELYEPLQKYFNGTFESKVKIHQNLQR
EGLIKSRMIGARLAEAEVIIFLDSHMEVTNSWLPPLLEPLVYYPTYATVPIVESLNHNTF
AYEYIGNGYRGTFDWNLRYQWLPRPQKDPEHISDNYELSSMTGGAYAIKREHFFHLGGYD
EELKIWNGRVVEVWFDDYKKYFYRNDPQRYAKIDAGDLSKQFELKKKLKCKPFKYFLDVV
APEMLERYPLQPQYFAAGSIQNQGLNLCISIAHLAKSYYKPLLLLDCSNDLKNPIKGSDF
ILTFERSIKHNDTNDQCLNGNTLALSNCHHQGNNQHWIFNITTRQINYRYSEKCLKGVRF
NETIELEECNNASLLQKWTWGFENVTALSNWQNTGIKMHY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g7798.t1 | CDD | cd00161 | RICIN | 258 | 380 | 0.000 |
| 8 | g7798.t1 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 1 | 188 | 0.000 |
| 9 | g7798.t1 | Gene3D | G3DSA:1.10.8.460 | - | 189 | 245 | 0.000 |
| 7 | g7798.t1 | Gene3D | G3DSA:2.80.10.50 | - | 251 | 394 | 0.000 |
| 4 | g7798.t1 | PANTHER | PTHR11675 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 2 | 188 | 0.000 |
| 3 | g7798.t1 | PANTHER | PTHR11675 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 189 | 380 | 0.000 |
| 2 | g7798.t1 | Pfam | PF00535 | Glycosyl transferase family 2 | 3 | 173 | 0.000 |
| 1 | g7798.t1 | Pfam | PF00652 | Ricin-type beta-trefoil lectin domain | 257 | 378 | 0.000 |
| 10 | g7798.t1 | ProSiteProfiles | PS50231 | Lectin domain of ricin B chain profile. | 266 | 381 | 14.064 |
| 6 | g7798.t1 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 4 | 243 | 0.000 |
| 5 | g7798.t1 | SUPERFAMILY | SSF50370 | Ricin B-like lectins | 250 | 381 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed