Gene loci information

Transcript annotation

  • This transcript has been annotated as ATP-binding cassette sub-family B member 7, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7799 g7799.t2 TTS g7799.t2 26154156 26154156
chr_2 g7799 g7799.t2 isoform g7799.t2 26154217 26159513
chr_2 g7799 g7799.t2 exon g7799.t2.exon1 26154217 26154414
chr_2 g7799 g7799.t2 cds g7799.t2.CDS1 26154217 26154414
chr_2 g7799 g7799.t2 exon g7799.t2.exon2 26154478 26155826
chr_2 g7799 g7799.t2 cds g7799.t2.CDS2 26154478 26155826
chr_2 g7799 g7799.t2 exon g7799.t2.exon3 26155886 26156040
chr_2 g7799 g7799.t2 cds g7799.t2.CDS3 26155886 26156040
chr_2 g7799 g7799.t2 exon g7799.t2.exon4 26156102 26156282
chr_2 g7799 g7799.t2 cds g7799.t2.CDS4 26156102 26156282
chr_2 g7799 g7799.t2 exon g7799.t2.exon5 26157765 26157915
chr_2 g7799 g7799.t2 cds g7799.t2.CDS5 26157765 26157915
chr_2 g7799 g7799.t2 exon g7799.t2.exon6 26158143 26159513
chr_2 g7799 g7799.t2 cds g7799.t2.CDS6 26158143 26159513
chr_2 g7799 g7799.t2 TSS g7799.t2 26160065 26160065

Sequences

>g7799.t2 Gene=g7799 Length=3405
ATGGGTCGCACGAGACGTTATCGTGAATCTCGCAAACGACAGCGTATTGTCAATCAACAA
CTTCTTCCATCAGACATTCATCATAATTTGTATAAGTTTCTTGCTAAAAATGGATGGAAA
AATGAGAATAAGCTAACAGTCTCAGCATTTCAGCTAACTGGTCGTGGTCTGAAAGCGAAA
CAAGATCTTTTGGAAAATGACCTAATTATAGAACTTCCTTATGAGTGTCTAATTTCTTTT
TATACAATCGCAACTGACACTGCATTTTATAGTCTATTTGATGAGGAGCGCTTAGACAAC
GCCAAATCATCAATTTCATTCCAGTCGCTGCTCGCTTTTTATCTTTGCTATCAAATTTCA
TTGTGTAATGAATCAAAGTGGCTTGTATATATCAGGACTTTGCCAGAAGATTTTTCAATG
CCATATTTTTGCAAAAAAACTGAATTGTATCATCTACCCGAGAACATTTTAATGAAAGTT
GTTGAACAAAATAATGTAATCAAGTCAAATTTTGAACGTTTAATGTATTTACTAGATGAC
AATGAAAAACATAAATTTAAACTTGATATATTTAAATGGTCCTACTTCGTATGTAATTCT
CGCAGTGTATATATCAATTCAAAAATTTTAGAACCACTTGTTGAATATCAGGGTACAAGT
GAGACAGCAAGAGTACTAAAGGAATTATTAAATGATGAAGCGTCTATGGCTCTTGCTCCA
TTGTTAGATCTACTTAATCATTCAGACAAAGTTAAAACTCAATGTCAGTTATCACATGCA
CAAGGATTTATAAAGGATAATGCTGACAACATTATAAACGGAAGAGTGAGATTGAGTTAT
TTGCTTCATACATTGAGCGCGTGTAAAAAGTATGAGGAGATTTTCATAAGCTATGGTACG
CATAACAACACAAAACTTTTACTTGAATATGGCTTTATTTTGCCAAATAATCAAATGGAT
TTTCTTGAATTCACATTAGATGATGTGAATAAATATATCAAGTCACATCACGAATTAAGA
TTGATGAATATACCAAAACACAAGTATAAATTCATTCGAGATCATGAATTGGATCAACAA
ATGTATATTGATGTAAATGATGGATTGAATCACACTTTTCAAGCTGTTATTGCAATACTG
TTGCTTCCTCAAAATCTGTATAATCTCACGCAAGTAGCTTTTGGCGATGATTTAAATTTT
AATGATATAAGAAAGCATGCTGTTGAGATTATGAAAATGAAAAGAGTGGAGTTGGAGAAA
ATCATGAGAGGACTGGAAAATGAACTTGAATTAAGCAAAAGTGCAGATACGTGCCTTGAA
TATTTTAAGGAATCGCAAAAACTTATAGATAAAGTTTTAGAATTTATTCAAGCATCATCA
ACAAAAACTCCCTCGATAGAAAACAAGAACACAGCAACGCATCAGTTTCATGCTTCTAGC
AAACAAAATGTGTTACATGATAAATCACCACTCGGAACAAATATCTTGGGAAATATTTTC
GTTAAGAAAGGCAAAAAGTCAGGAAATTATTGGCCACAACAAGAACAACAAATTCGAACA
TGTTTTCATCCAGGTGTTAGCTCTGCAGCTTTCTCGAATGAATCGATTGGCGATGTGCGT
GCTCCAGAAGTTAGTGGAAGTCAAATGCTTAGAGCAATGATGGCATATGTTTGGCCTAAA
GATGATGATTTTATCCGAAAAAGAGTTATCATTTCACTGAGTCTTCTTGGCGGCGCAAAA
CTTTTGAATGTATGTGTGCCATTTTTGTTTAAAGGAGCTATTGATTATTTAAATGTACTT
CAAATGGGGACACCAACAGAGACAACTGCAGCCATTATAAGTTCAATGCTCATAGGATAT
GGCATCGCAAGAGCGGGATCTGCAGGTTTCAATGAACTTCGAAATGCTGTTTTTGCACGT
GTTGCTTCACATTCTATTAGAAAAATAGCCGTAAACACTTTTATGCATCTACACAATCTC
GATTTGTCATTTCATCTCAATAAACAAACGGGTGCTCTCTCAAAAACCATCGATAGAGGC
TCGCGTGGAATAAATTTTGTGCTGAACGCAATGGTCTTTAATGTCGTGCCAACGATCTTT
GAACTTGGTCTGGTGTCAATGATTTTAGGAGCAAAATGTGGTCTCGCATATGCTGGTATT
TCAATGGGCTGTGTTGGTATTTATGCAGTATATACTCTGGCTGTAACACAATGGAGAACA
AAGTTCAGGATATTTATGAACAGAGCAGAAAACGAAGCCGGCAATAAAGCAGTTGATTCA
CTTATCAACTATGAAACTGTGAAATATTTTAATAATGAAAATTACGAGGCACAACAGTAC
GATAGAGTGCTCAAAAATTATGAAGATGCGAGTTTGAAAACCAGCTCAAGTTTGGCATTA
TTAAATTTTGGACAGAATGCAATTTTTAGTGTGGCTTTAAGTGCGATAATGTTGATGGCT
GCAAACGATATTGCTCATGGAAATTTGACAGTTGGAGATCTTGTGATGGTCAATGGATTG
CTTTTTCAACTCTCGATACCACTTGGTTTTCTTGGAAGTGTTTATCGTGAAGTGCGTCAA
GCATTATTGGACATGAGATCAATGTTCACTCTTCTAGGTGTTGAAAGTCAAGTACAAAAT
AAAGATGATGCTATACCATTGGCAGTCAACCGACAAAATTCTAACATTGAATTTAGAAAT
GTTTCATTTGAGTATCAAAATGGCAAGAAAATTTTTGACGACTTGACATTTATAATACCA
GCTGGAAAGAAAGTTGGATTTGTTGGTGGCTCGGGATCAGGAAAATCAACAATGGTACGT
TTATTATTTAGATTTTTTGAACCCACAAAAGGTGACATTTTCATAGCTGGTCAAAATATA
AAAGATGTCGACATGAATAGCTTAAGAAAAGCGATTGCAATTGTGCCTCAAGATTCTGTC
CTTTTTCATGACACAATCAGACATAATATTCATTATGGTGACTTAAGTAAATCAGAAAGT
GAAATGGAAAATGCTGCAAAAATGGCAGATCTTCATGATTCAATTTTAAAGTGGCCTCAT
AAATACGACACACAAGTTGGAGAACGTGGATTGAAATTGAGTGGTGGCGAAAAACAGCGT
GTTGCAATTGCACGTGCAATTTTGAAAAATTCACCCATTTTAATATTTGATGAAGCCACA
AGCAGTTTAGATTCAATAACAGAACATAATATTTTAAATGCACTTTCACGAGCAACGGAA
GGTAGAACGAGTATCTGCATCGCTCATCGATTATCAACTGTAATGGATGCAGATGAAATT
ATAGTTCTTGATAATGGACGAATTGCTGAACGAGGAACGCATGATGAGCTCTTGAAGTCT
AAAGGATTGTATGCAAAATTGTGGCATACACAAAATCGATTGTAA

>g7799.t2 Gene=g7799 Length=1134
MGRTRRYRESRKRQRIVNQQLLPSDIHHNLYKFLAKNGWKNENKLTVSAFQLTGRGLKAK
QDLLENDLIIELPYECLISFYTIATDTAFYSLFDEERLDNAKSSISFQSLLAFYLCYQIS
LCNESKWLVYIRTLPEDFSMPYFCKKTELYHLPENILMKVVEQNNVIKSNFERLMYLLDD
NEKHKFKLDIFKWSYFVCNSRSVYINSKILEPLVEYQGTSETARVLKELLNDEASMALAP
LLDLLNHSDKVKTQCQLSHAQGFIKDNADNIINGRVRLSYLLHTLSACKKYEEIFISYGT
HNNTKLLLEYGFILPNNQMDFLEFTLDDVNKYIKSHHELRLMNIPKHKYKFIRDHELDQQ
MYIDVNDGLNHTFQAVIAILLLPQNLYNLTQVAFGDDLNFNDIRKHAVEIMKMKRVELEK
IMRGLENELELSKSADTCLEYFKESQKLIDKVLEFIQASSTKTPSIENKNTATHQFHASS
KQNVLHDKSPLGTNILGNIFVKKGKKSGNYWPQQEQQIRTCFHPGVSSAAFSNESIGDVR
APEVSGSQMLRAMMAYVWPKDDDFIRKRVIISLSLLGGAKLLNVCVPFLFKGAIDYLNVL
QMGTPTETTAAIISSMLIGYGIARAGSAGFNELRNAVFARVASHSIRKIAVNTFMHLHNL
DLSFHLNKQTGALSKTIDRGSRGINFVLNAMVFNVVPTIFELGLVSMILGAKCGLAYAGI
SMGCVGIYAVYTLAVTQWRTKFRIFMNRAENEAGNKAVDSLINYETVKYFNNENYEAQQY
DRVLKNYEDASLKTSSSLALLNFGQNAIFSVALSAIMLMAANDIAHGNLTVGDLVMVNGL
LFQLSIPLGFLGSVYREVRQALLDMRSMFTLLGVESQVQNKDDAIPLAVNRQNSNIEFRN
VSFEYQNGKKIFDDLTFIIPAGKKVGFVGGSGSGKSTMVRLLFRFFEPTKGDIFIAGQNI
KDVDMNSLRKAIAIVPQDSVLFHDTIRHNIHYGDLSKSESEMENAAKMADLHDSILKWPH
KYDTQVGERGLKLSGGEKQRVAIARAILKNSPILIFDEATSSLDSITEHNILNALSRATE
GRTSICIAHRLSTVMDADEIIVLDNGRIAERGTHDELLKSKGLYAKLWHTQNRL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
27 g7799.t2 CDD cd19177 SET_SETD4 44 314 9.25032E-54
26 g7799.t2 CDD cd18582 ABC_6TM_ATM1_ABCB7 572 868 2.32895E-156
12 g7799.t2 Coils Coil Coil 408 435 -
9 g7799.t2 Gene3D G3DSA:3.90.1410.10 set domain protein methyltransferase 3 312 1.1E-45
11 g7799.t2 Gene3D G3DSA:1.20.1560.10 - 556 883 1.6E-128
10 g7799.t2 Gene3D G3DSA:3.40.50.300 - 887 1133 4.4E-92
4 g7799.t2 PANTHER PTHR24221:SF520 ABC TRANSPORTER OF THE MITOCHONDRION 1-RELATED 534 1132 8.4E-212
5 g7799.t2 PANTHER PTHR24221 ATP-BINDING CASSETTE SUB-FAMILY B 534 1132 8.4E-212
1 g7799.t2 Pfam PF00856 SET domain 54 299 1.2E-4
2 g7799.t2 Pfam PF00664 ABC transporter transmembrane region 570 846 2.0E-27
3 g7799.t2 Pfam PF00005 ABC transporter 913 1061 1.3E-32
16 g7799.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 568 -
25 g7799.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 569 590 -
18 g7799.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 591 609 -
20 g7799.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 610 630 -
14 g7799.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 631 685 -
24 g7799.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 686 709 -
19 g7799.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 710 714 -
23 g7799.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 715 736 -
13 g7799.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 737 797 -
22 g7799.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 798 820 -
17 g7799.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 821 839 -
21 g7799.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 840 858 -
15 g7799.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 859 1134 -
34 g7799.t2 ProSitePatterns PS00211 ABC transporters family signature. 1033 1047 -
36 g7799.t2 ProSiteProfiles PS50280 SET domain profile. 43 299 10.195
35 g7799.t2 ProSiteProfiles PS50929 ABC transporter integral membrane type-1 fused domain profile. 570 860 35.125
37 g7799.t2 ProSiteProfiles PS50893 ATP-binding cassette, ABC transporter-type domain profile. 896 1130 23.109
33 g7799.t2 SMART SM00382 AAA_5 921 1107 2.6E-17
8 g7799.t2 SUPERFAMILY SSF82199 SET domain 27 317 4.41E-43
6 g7799.t2 SUPERFAMILY SSF90123 ABC transporter transmembrane region 565 866 2.22E-49
7 g7799.t2 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 890 1131 1.96E-89
31 g7799.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 608 630 -
30 g7799.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 686 708 -
28 g7799.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 713 735 -
29 g7799.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 797 819 -
32 g7799.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 834 856 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055085 transmembrane transport BP
GO:0005524 ATP binding MF
GO:0042626 ATPase-coupled transmembrane transporter activity MF
GO:0016279 protein-lysine N-methyltransferase activity MF
GO:0005515 protein binding MF
GO:0018023 peptidyl-lysine trimethylation BP
GO:0016021 integral component of membrane CC
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values