Gene loci information

Transcript annotation

  • This transcript has been annotated as ATP-binding cassette sub-family B member 7, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7799 g7799.t4 TTS g7799.t4 26154156 26154156
chr_2 g7799 g7799.t4 isoform g7799.t4 26154217 26155826
chr_2 g7799 g7799.t4 exon g7799.t4.exon1 26154217 26154414
chr_2 g7799 g7799.t4 cds g7799.t4.CDS1 26154217 26154414
chr_2 g7799 g7799.t4 exon g7799.t4.exon2 26154478 26155826
chr_2 g7799 g7799.t4 cds g7799.t4.CDS2 26154478 26155722
chr_2 g7799 g7799.t4 TSS g7799.t4 NA NA

Sequences

>g7799.t4 Gene=g7799 Length=1547
ATGGCATCGCAAGAGCGGGATCTGCAGGTTTCAATGAACTTCGAAATGCTGTTTTTGCAC
GTGTTGCTTCACATTCTATTAGAAAAATAGCCGTAAACACTTTTATGCATCTACACAATC
TCGATTTGTCATTTCATCTCAATAAACAAACGGGTGCTCTCTCAAAAACCATCGATAGAG
GCTCGCGTGGAATAAATTTTGTGCTGAACGCAATGGTCTTTAATGTCGTGCCAACGATCT
TTGAACTTGGTCTGGTGTCAATGATTTTAGGAGCAAAATGTGGTCTCGCATATGCTGGTA
TTTCAATGGGCTGTGTTGGTATTTATGCAGTATATACTCTGGCTGTAACACAATGGAGAA
CAAAGTTCAGGATATTTATGAACAGAGCAGAAAACGAAGCCGGCAATAAAGCAGTTGATT
CACTTATCAACTATGAAACTGTGAAATATTTTAATAATGAAAATTACGAGGCACAACAGT
ACGATAGAGTGCTCAAAAATTATGAAGATGCGAGTTTGAAAACCAGCTCAAGTTTGGCAT
TATTAAATTTTGGACAGAATGCAATTTTTAGTGTGGCTTTAAGTGCGATAATGTTGATGG
CTGCAAACGATATTGCTCATGGAAATTTGACAGTTGGAGATCTTGTGATGGTCAATGGAT
TGCTTTTTCAACTCTCGATACCACTTGGTTTTCTTGGAAGTGTTTATCGTGAAGTGCGTC
AAGCATTATTGGACATGAGATCAATGTTCACTCTTCTAGGTGTTGAAAGTCAAGTACAAA
ATAAAGATGATGCTATACCATTGGCAGTCAACCGACAAAATTCTAACATTGAATTTAGAA
ATGTTTCATTTGAGTATCAAAATGGCAAGAAAATTTTTGACGACTTGACATTTATAATAC
CAGCTGGAAAGAAAGTTGGATTTGTTGGTGGCTCGGGATCAGGAAAATCAACAATGGTAC
GTTTATTATTTAGATTTTTTGAACCCACAAAAGGTGACATTTTCATAGCTGGTCAAAATA
TAAAAGATGTCGACATGAATAGCTTAAGAAAAGCGATTGCAATTGTGCCTCAAGATTCTG
TCCTTTTTCATGACACAATCAGACATAATATTCATTATGGTGACTTAAGTAAATCAGAAA
GTGAAATGGAAAATGCTGCAAAAATGGCAGATCTTCATGATTCAATTTTAAAGTGGCCTC
ATAAATACGACACACAAGTTGGAGAACGTGGATTGAAATTGAGTGGTGGCGAAAAACAGC
GTGTTGCAATTGCACGTGCAATTTTGAAAAATTCACCCATTTTAATATTTGATGAAGCCA
CAAGCAGTTTAGATTCAATAACAGAACATAATATTTTAAATGCACTTTCACGAGCAACGG
AAGGTAGAACGAGTATCTGCATCGCTCATCGATTATCAACTGTAATGGATGCAGATGAAA
TTATAGTTCTTGATAATGGACGAATTGCTGAACGAGGAACGCATGATGAGCTCTTGAAGT
CTAAAGGATTGTATGCAAAATTGTGGCATACACAAAATCGATTGTAA

>g7799.t4 Gene=g7799 Length=480
MHLHNLDLSFHLNKQTGALSKTIDRGSRGINFVLNAMVFNVVPTIFELGLVSMILGAKCG
LAYAGISMGCVGIYAVYTLAVTQWRTKFRIFMNRAENEAGNKAVDSLINYETVKYFNNEN
YEAQQYDRVLKNYEDASLKTSSSLALLNFGQNAIFSVALSAIMLMAANDIAHGNLTVGDL
VMVNGLLFQLSIPLGFLGSVYREVRQALLDMRSMFTLLGVESQVQNKDDAIPLAVNRQNS
NIEFRNVSFEYQNGKKIFDDLTFIIPAGKKVGFVGGSGSGKSTMVRLLFRFFEPTKGDIF
IAGQNIKDVDMNSLRKAIAIVPQDSVLFHDTIRHNIHYGDLSKSESEMENAAKMADLHDS
ILKWPHKYDTQVGERGLKLSGGEKQRVAIARAILKNSPILIFDEATSSLDSITEHNILNA
LSRATEGRTSICIAHRLSTVMDADEIIVLDNGRIAERGTHDELLKSKGLYAKLWHTQNRL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
18 g7799.t4 CDD cd18582 ABC_6TM_ATM1_ABCB7 2 214 1.92287E-124
8 g7799.t4 Gene3D G3DSA:1.20.1560.10 - 1 230 6.1E-94
7 g7799.t4 Gene3D G3DSA:3.40.50.300 - 233 479 7.6E-93
3 g7799.t4 PANTHER PTHR24221:SF520 ABC TRANSPORTER OF THE MITOCHONDRION 1-RELATED 2 478 1.6E-191
4 g7799.t4 PANTHER PTHR24221 ATP-BINDING CASSETTE SUB-FAMILY B 2 478 1.6E-191
1 g7799.t4 Pfam PF00664 ABC transporter transmembrane region 2 192 6.2E-22
2 g7799.t4 Pfam PF00005 ABC transporter 259 407 3.1E-33
10 g7799.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 31 -
15 g7799.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 32 55 -
12 g7799.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 56 60 -
14 g7799.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 61 82 -
11 g7799.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 83 143 -
17 g7799.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 144 166 -
13 g7799.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 167 185 -
16 g7799.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 186 204 -
9 g7799.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 205 480 -
23 g7799.t4 ProSitePatterns PS00211 ABC transporters family signature. 379 393 -
25 g7799.t4 ProSiteProfiles PS50929 ABC transporter integral membrane type-1 fused domain profile. 1 206 28.399
26 g7799.t4 ProSiteProfiles PS50893 ATP-binding cassette, ABC transporter-type domain profile. 242 476 23.109
24 g7799.t4 SMART SM00382 AAA_5 267 453 2.6E-17
5 g7799.t4 SUPERFAMILY SSF90123 ABC transporter transmembrane region 2 219 2.88E-37
6 g7799.t4 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 236 477 3.26E-90
19 g7799.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 32 54 -
21 g7799.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 59 81 -
22 g7799.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 143 165 -
20 g7799.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 180 202 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055085 transmembrane transport BP
GO:0005524 ATP binding MF
GO:0042626 ATPase-coupled transmembrane transporter activity MF
GO:0016021 integral component of membrane CC
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values