Gene loci information

Transcript annotation

  • This transcript has been annotated as ATP-binding cassette sub-family B member 7, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7799 g7799.t5 isoform g7799.t5 26155188 26157914
chr_2 g7799 g7799.t5 exon g7799.t5.exon1 26155188 26155826
chr_2 g7799 g7799.t5 cds g7799.t5.CDS1 26155189 26155826
chr_2 g7799 g7799.t5 exon g7799.t5.exon2 26155886 26156040
chr_2 g7799 g7799.t5 cds g7799.t5.CDS2 26155886 26156040
chr_2 g7799 g7799.t5 exon g7799.t5.exon3 26156102 26156231
chr_2 g7799 g7799.t5 cds g7799.t5.CDS3 26156102 26156160
chr_2 g7799 g7799.t5 exon g7799.t5.exon4 26157765 26157914
chr_2 g7799 g7799.t5 TSS g7799.t5 NA NA
chr_2 g7799 g7799.t5 TTS g7799.t5 NA NA

Sequences

>g7799.t5 Gene=g7799 Length=1074
CATCATCAACAAAAACTCCCTCGATAGAAAACAAGAACACAGCAACGCATCAGTTTCATG
CTTCTAGCAAACAAAATGTGTTACATGATAAATCACCACTCGGAACAAATATCTTGGGAA
ATATTTTCGTTAAGAAAGGCAAAAAGTCAGGTGTTAGCTCTGCAGCTTTCTCGAATGAAT
CGATTGGCGATGTGCGTGCTCCAGAAGTTAGTGGAAGTCAAATGCTTAGAGCAATGATGG
CATATGTTTGGCCTAAAGATGATGATTTTATCCGAAAAAGAGTTATCATTTCACTGAGTC
TTCTTGGCGGCGCAAAACTTTTGAATGTATGTGTGCCATTTTTGTTTAAAGGAGCTATTG
ATTATTTAAATGTACTTCAAATGGGGACACCAACAGAGACAACTGCAGCCATTATAAGTT
CAATGCTCATAGGATATGGCATCGCAAGAGCGGGATCTGCAGGTTTCAATGAACTTCGAA
ATGCTGTTTTTGCACGTGTTGCTTCACATTCTATTAGAAAAATAGCCGTAAACACTTTTA
TGCATCTACACAATCTCGATTTGTCATTTCATCTCAATAAACAAACGGGTGCTCTCTCAA
AAACCATCGATAGAGGCTCGCGTGGAATAAATTTTGTGCTGAACGCAATGGTCTTTAATG
TCGTGCCAACGATCTTTGAACTTGGTCTGGTGTCAATGATTTTAGGAGCAAAATGTGGTC
TCGCATATGCTGGTATTTCAATGGGCTGTGTTGGTATTTATGCAGTATATACTCTGGCTG
TAACACAATGGAGAACAAAGTTCAGGATATTTATGAACAGAGCAGAAAACGAAGCCGGCA
ATAAAGCAGTTGATTCACTTATCAACTATGAAACTGTGAAATATTTTAATAATGAAAATT
ACGAGGCACAACAGTACGATAGAGTGCTCAAAAATTATGAAGATGCGAGTTTGAAAACCA
GCTCAAGTTTGGCATTATTAAATTTTGGACAGAATGCAATTTTTAGTGTGGCTTTAAGTG
CGATAATGTTGATGGCTGCAAACGATATTGCTCATGGAAATTTGACAGTTGGAG

>g7799.t5 Gene=g7799 Length=284
MLRAMMAYVWPKDDDFIRKRVIISLSLLGGAKLLNVCVPFLFKGAIDYLNVLQMGTPTET
TAAIISSMLIGYGIARAGSAGFNELRNAVFARVASHSIRKIAVNTFMHLHNLDLSFHLNK
QTGALSKTIDRGSRGINFVLNAMVFNVVPTIFELGLVSMILGAKCGLAYAGISMGCVGIY
AVYTLAVTQWRTKFRIFMNRAENEAGNKAVDSLINYETVKYFNNENYEAQQYDRVLKNYE
DASLKTSSSLALLNFGQNAIFSVALSAIMLMAANDIAHGNLTVG

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g7799.t5 CDD cd18582 ABC_6TM_ATM1_ABCB7 24 284 1.43339E-130
5 g7799.t5 Gene3D G3DSA:1.20.1560.10 - 8 284 7.8E-108
2 g7799.t5 PANTHER PTHR24221 ATP-BINDING CASSETTE SUB-FAMILY B 2 284 3.1E-87
3 g7799.t5 PANTHER PTHR24221:SF494 ABC TRANSPORTER B FAMILY MEMBER 23, MITOCHONDRIAL-RELATED 2 284 3.1E-87
1 g7799.t5 Pfam PF00664 ABC transporter transmembrane region 22 284 3.2E-26
6 g7799.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 20 -
12 g7799.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 21 42 -
9 g7799.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 43 61 -
11 g7799.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 62 82 -
7 g7799.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 83 137 -
13 g7799.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 138 161 -
10 g7799.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 162 166 -
14 g7799.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 167 188 -
8 g7799.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 189 284 -
21 g7799.t5 ProSiteProfiles PS50929 ABC transporter integral membrane type-1 fused domain profile. 22 284 29.396
4 g7799.t5 SUPERFAMILY SSF90123 ABC transporter transmembrane region 18 284 2.49E-40
18 g7799.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 21 43 -
20 g7799.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 58 80 -
16 g7799.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 138 160 -
17 g7799.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 165 187 -
19 g7799.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 250 272 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055085 transmembrane transport BP
GO:0005524 ATP binding MF
GO:0042626 ATPase-coupled transmembrane transporter activity MF
GO:0016021 integral component of membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values