Gene loci information

Transcript annotation

  • This transcript has been annotated as ATP-binding cassette sub-family B member 7, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7799 g7799.t6 isoform g7799.t6 26155529 26160065
chr_2 g7799 g7799.t6 exon g7799.t6.exon1 26155529 26155826
chr_2 g7799 g7799.t6 cds g7799.t6.CDS1 26155531 26155826
chr_2 g7799 g7799.t6 exon g7799.t6.exon2 26155886 26156040
chr_2 g7799 g7799.t6 cds g7799.t6.CDS2 26155886 26156040
chr_2 g7799 g7799.t6 exon g7799.t6.exon3 26156102 26156284
chr_2 g7799 g7799.t6 cds g7799.t6.CDS3 26156102 26156148
chr_2 g7799 g7799.t6 exon g7799.t6.exon4 26157765 26157915
chr_2 g7799 g7799.t6 exon g7799.t6.exon5 26159770 26160065
chr_2 g7799 g7799.t6 TSS g7799.t6 26160065 26160065
chr_2 g7799 g7799.t6 TTS g7799.t6 NA NA

Sequences

>g7799.t6 Gene=g7799 Length=1083
AACAACAAAATTTTTGTCGTGTGGAATTTTCTAAAATTTATTATTAATTGCATTTACGCA
ATTAATTCATGTAACTATTGATCTAAAAATAAATTCAATGTTGCAAATGAGTGTATAAAG
TTAAAACAACATCAGGACAAGTAGTGTTATTGTTTAGAAATATGGCAATATTAAATTATG
TTAAAATTTTTGGATGCCAAAGAATAATTTTACATAATTCGATTGCTAAATCAACATTAA
TTCATAGACAGATTCTTAAGAATTGCCATATATACAACTATTTAACAGTTGCAAGAGCAT
CATCAACAAAAACTCCCTCGATAGAAAACAAGAACACAGCAACGCATCAGTTTCATGCTT
CTAGCAAACAAAATGTGTTACATGATAAATCACCACTCGGAACAAATATCTTGGGAAATA
TTTTCGTTAAGAAAGGCAAAAAGTCAGAGGAAATTATTGGCCACAACAAGAACAACAAAT
TCGAACATGTTTTCATCCAGGTGTTAGCTCTGCAGCTTTCTCGAATGAATCGATTGGCGA
TGTGCGTGCTCCAGAAGTTAGTGGAAGTCAAATGCTTAGAGCAATGATGGCATATGTTTG
GCCTAAAGATGATGATTTTATCCGAAAAAGAGTTATCATTTCACTGAGTCTTCTTGGCGG
CGCAAAACTTTTGAATGTATGTGTGCCATTTTTGTTTAAAGGAGCTATTGATTATTTAAA
TGTACTTCAAATGGGGACACCAACAGAGACAACTGCAGCCATTATAAGTTCAATGCTCAT
AGGATATGGCATCGCAAGAGCGGGATCTGCAGGTTTCAATGAACTTCGAAATGCTGTTTT
TGCACGTGTTGCTTCACATTCTATTAGAAAAATAGCCGTAAACACTTTTATGCATCTACA
CAATCTCGATTTGTCATTTCATCTCAATAAACAAACGGGTGCTCTCTCAAAAACCATCGA
TAGAGGCTCGCGTGGAATAAATTTTGTGCTGAACGCAATGGTCTTTAATGTCGTGCCAAC
GATCTTTGAACTTGGTCTGGTGTCAATGATTTTAGGAGCAAAATGTGGTCTCGCATATGC
TGG

>g7799.t6 Gene=g7799 Length=166
MMAYVWPKDDDFIRKRVIISLSLLGGAKLLNVCVPFLFKGAIDYLNVLQMGTPTETTAAI
ISSMLIGYGIARAGSAGFNELRNAVFARVASHSIRKIAVNTFMHLHNLDLSFHLNKQTGA
LSKTIDRGSRGINFVLNAMVFNVVPTIFELGLVSMILGAKCGLAYA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g7799.t6 Gene3D G3DSA:1.20.1560.10 - 4 166 5.8E-57
2 g7799.t6 PANTHER PTHR24221 ATP-BINDING CASSETTE SUB-FAMILY B 6 166 1.3E-38
3 g7799.t6 PANTHER PTHR24221:SF494 ABC TRANSPORTER B FAMILY MEMBER 23, MITOCHONDRIAL-RELATED 6 166 1.3E-38
1 g7799.t6 Pfam PF00664 ABC transporter transmembrane region 18 151 2.7E-9
10 g7799.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 16 -
15 g7799.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 17 38 -
12 g7799.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 39 57 -
14 g7799.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 58 78 -
11 g7799.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 79 133 -
16 g7799.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 134 157 -
13 g7799.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 158 166 -
9 g7799.t6 ProSiteProfiles PS50929 ABC transporter integral membrane type-1 fused domain profile. 18 157 12.654
7 g7799.t6 SUPERFAMILY SSF90123 ABC transporter transmembrane region 14 157 1.96E-17
4 g7799.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 20 42 -
6 g7799.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 57 79 -
5 g7799.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 134 156 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055085 transmembrane transport BP
GO:0005524 ATP binding MF
GO:0042626 ATPase-coupled transmembrane transporter activity MF
GO:0016021 integral component of membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values