Gene loci information

Transcript annotation

  • This transcript has been annotated as ATP-binding cassette sub-family B member 7, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7799 g7799.t7 isoform g7799.t7 26155529 26160065
chr_2 g7799 g7799.t7 exon g7799.t7.exon1 26155529 26155826
chr_2 g7799 g7799.t7 cds g7799.t7.CDS1 26155531 26155826
chr_2 g7799 g7799.t7 exon g7799.t7.exon2 26155886 26156040
chr_2 g7799 g7799.t7 cds g7799.t7.CDS2 26155886 26156040
chr_2 g7799 g7799.t7 exon g7799.t7.exon3 26156102 26156231
chr_2 g7799 g7799.t7 cds g7799.t7.CDS3 26156102 26156231
chr_2 g7799 g7799.t7 exon g7799.t7.exon4 26157765 26157915
chr_2 g7799 g7799.t7 cds g7799.t7.CDS4 26157765 26157915
chr_2 g7799 g7799.t7 exon g7799.t7.exon5 26159770 26160065
chr_2 g7799 g7799.t7 cds g7799.t7.CDS5 26159770 26159904
chr_2 g7799 g7799.t7 TSS g7799.t7 26160065 26160065
chr_2 g7799 g7799.t7 TTS g7799.t7 NA NA

Sequences

>g7799.t7 Gene=g7799 Length=1030
AACAACAAAATTTTTGTCGTGTGGAATTTTCTAAAATTTATTATTAATTGCATTTACGCA
ATTAATTCATGTAACTATTGATCTAAAAATAAATTCAATGTTGCAAATGAGTGTATAAAG
TTAAAACAACATCAGGACAAGTAGTGTTATTGTTTAGAAATATGGCAATATTAAATTATG
TTAAAATTTTTGGATGCCAAAGAATAATTTTACATAATTCGATTGCTAAATCAACATTAA
TTCATAGACAGATTCTTAAGAATTGCCATATATACAACTATTTAACAGTTGCAAGAGCAT
CATCAACAAAAACTCCCTCGATAGAAAACAAGAACACAGCAACGCATCAGTTTCATGCTT
CTAGCAAACAAAATGTGTTACATGATAAATCACCACTCGGAACAAATATCTTGGGAAATA
TTTTCGTTAAGAAAGGCAAAAAGTCAGGTGTTAGCTCTGCAGCTTTCTCGAATGAATCGA
TTGGCGATGTGCGTGCTCCAGAAGTTAGTGGAAGTCAAATGCTTAGAGCAATGATGGCAT
ATGTTTGGCCTAAAGATGATGATTTTATCCGAAAAAGAGTTATCATTTCACTGAGTCTTC
TTGGCGGCGCAAAACTTTTGAATGTATGTGTGCCATTTTTGTTTAAAGGAGCTATTGATT
ATTTAAATGTACTTCAAATGGGGACACCAACAGAGACAACTGCAGCCATTATAAGTTCAA
TGCTCATAGGATATGGCATCGCAAGAGCGGGATCTGCAGGTTTCAATGAACTTCGAAATG
CTGTTTTTGCACGTGTTGCTTCACATTCTATTAGAAAAATAGCCGTAAACACTTTTATGC
ATCTACACAATCTCGATTTGTCATTTCATCTCAATAAACAAACGGGTGCTCTCTCAAAAA
CCATCGATAGAGGCTCGCGTGGAATAAATTTTGTGCTGAACGCAATGGTCTTTAATGTCG
TGCCAACGATCTTTGAACTTGGTCTGGTGTCAATGATTTTAGGAGCAAAATGTGGTCTCG
CATATGCTGG

>g7799.t7 Gene=g7799 Length=289
MAILNYVKIFGCQRIILHNSIAKSTLIHRQILKNCHIYNYLTVARASSTKTPSIENKNTA
THQFHASSKQNVLHDKSPLGTNILGNIFVKKGKKSGVSSAAFSNESIGDVRAPEVSGSQM
LRAMMAYVWPKDDDFIRKRVIISLSLLGGAKLLNVCVPFLFKGAIDYLNVLQMGTPTETT
AAIISSMLIGYGIARAGSAGFNELRNAVFARVASHSIRKIAVNTFMHLHNLDLSFHLNKQ
TGALSKTIDRGSRGINFVLNAMVFNVVPTIFELGLVSMILGAKCGLAYA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g7799.t7 Gene3D G3DSA:1.20.1560.10 - 127 289 3.5E-56
2 g7799.t7 PANTHER PTHR24221 ATP-BINDING CASSETTE SUB-FAMILY B 67 289 2.6E-41
3 g7799.t7 PANTHER PTHR24221:SF494 ABC TRANSPORTER B FAMILY MEMBER 23, MITOCHONDRIAL-RELATED 67 289 2.6E-41
1 g7799.t7 Pfam PF00664 ABC transporter transmembrane region 141 274 1.3E-8
11 g7799.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 139 -
14 g7799.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 140 161 -
12 g7799.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 162 180 -
16 g7799.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 181 201 -
10 g7799.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 202 256 -
15 g7799.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 257 280 -
13 g7799.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 281 289 -
9 g7799.t7 ProSiteProfiles PS50929 ABC transporter integral membrane type-1 fused domain profile. 141 280 12.654
7 g7799.t7 SUPERFAMILY SSF90123 ABC transporter transmembrane region 136 280 3.53E-17
5 g7799.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 142 164 -
4 g7799.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 179 201 -
6 g7799.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 257 279 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055085 transmembrane transport BP
GO:0005524 ATP binding MF
GO:0042626 ATPase-coupled transmembrane transporter activity MF
GO:0016021 integral component of membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values