General information for g7799.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative SET domain-containing protein 4.
Parent gene
- The parent gene g7799 is located on chr_2: 26158143..26160065 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7799 | g7799.t9 | TTS | g7799.t9 | 26158036 | 26158036 |
| chr_2 | g7799 | g7799.t9 | isoform | g7799.t9 | 26158143 | 26159513 |
| chr_2 | g7799 | g7799.t9 | exon | g7799.t9.exon1 | 26158143 | 26159513 |
| chr_2 | g7799 | g7799.t9 | cds | g7799.t9.CDS1 | 26158143 | 26159513 |
| chr_2 | g7799 | g7799.t9 | TSS | g7799.t9 | 26160065 | 26160065 |
Sequences
>g7799.t9 Gene=g7799 Length=1371
ATGGGTCGCACGAGACGTTATCGTGAATCTCGCAAACGACAGCGTATTGTCAATCAACAA
CTTCTTCCATCAGACATTCATCATAATTTGTATAAGTTTCTTGCTAAAAATGGATGGAAA
AATGAGAATAAGCTAACAGTCTCAGCATTTCAGCTAACTGGTCGTGGTCTGAAAGCGAAA
CAAGATCTTTTGGAAAATGACCTAATTATAGAACTTCCTTATGAGTGTCTAATTTCTTTT
TATACAATCGCAACTGACACTGCATTTTATAGTCTATTTGATGAGGAGCGCTTAGACAAC
GCCAAATCATCAATTTCATTCCAGTCGCTGCTCGCTTTTTATCTTTGCTATCAAATTTCA
TTGTGTAATGAATCAAAGTGGCTTGTATATATCAGGACTTTGCCAGAAGATTTTTCAATG
CCATATTTTTGCAAAAAAACTGAATTGTATCATCTACCCGAGAACATTTTAATGAAAGTT
GTTGAACAAAATAATGTAATCAAGTCAAATTTTGAACGTTTAATGTATTTACTAGATGAC
AATGAAAAACATAAATTTAAACTTGATATATTTAAATGGTCCTACTTCGTATGTAATTCT
CGCAGTGTATATATCAATTCAAAAATTTTAGAACCACTTGTTGAATATCAGGGTACAAGT
GAGACAGCAAGAGTACTAAAGGAATTATTAAATGATGAAGCGTCTATGGCTCTTGCTCCA
TTGTTAGATCTACTTAATCATTCAGACAAAGTTAAAACTCAATGTCAGTTATCACATGCA
CAAGGATTTATAAAGGATAATGCTGACAACATTATAAACGGAAGAGTGAGATTGAGTTAT
TTGCTTCATACATTGAGCGCGTGTAAAAAGTATGAGGAGATTTTCATAAGCTATGGTACG
CATAACAACACAAAACTTTTACTTGAATATGGCTTTATTTTGCCAAATAATCAAATGGAT
TTTCTTGAATTCACATTAGATGATGTGAATAAATATATCAAGTCACATCACGAATTAAGA
TTGATGAATATACCAAAACACAAGTATAAATTCATTCGAGATCATGAATTGGATCAACAA
ATGTATATTGATGTAAATGATGGATTGAATCACACTTTTCAAGCTGTTATTGCAATACTG
TTGCTTCCTCAAAATCTGTATAATCTCACGCAAGTAGCTTTTGGCGATGATTTAAATTTT
AATGATATAAGAAAGCATGCTGTTGAGATTATGAAAATGAAAAGAGTGGAGTTGGAGAAA
ATCATGAGAGGACTGGAAAATGAACTTGAATTAAGCAAAAGTGCAGATACGTGCCTTGAA
TATTTTAAGGAATCGCAAAAACTTATAGATAAAGTTTTAGAATTTATTCAA
>g7799.t9 Gene=g7799 Length=457
MGRTRRYRESRKRQRIVNQQLLPSDIHHNLYKFLAKNGWKNENKLTVSAFQLTGRGLKAK
QDLLENDLIIELPYECLISFYTIATDTAFYSLFDEERLDNAKSSISFQSLLAFYLCYQIS
LCNESKWLVYIRTLPEDFSMPYFCKKTELYHLPENILMKVVEQNNVIKSNFERLMYLLDD
NEKHKFKLDIFKWSYFVCNSRSVYINSKILEPLVEYQGTSETARVLKELLNDEASMALAP
LLDLLNHSDKVKTQCQLSHAQGFIKDNADNIINGRVRLSYLLHTLSACKKYEEIFISYGT
HNNTKLLLEYGFILPNNQMDFLEFTLDDVNKYIKSHHELRLMNIPKHKYKFIRDHELDQQ
MYIDVNDGLNHTFQAVIAILLLPQNLYNLTQVAFGDDLNFNDIRKHAVEIMKMKRVELEK
IMRGLENELELSKSADTCLEYFKESQKLIDKVLEFIQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g7799.t9 | CDD | cd19177 | SET_SETD4 | 44 | 314 | 1.89177E-53 |
| 5 | g7799.t9 | Coils | Coil | Coil | 408 | 435 | - |
| 4 | g7799.t9 | Gene3D | G3DSA:3.90.1410.10 | set domain protein methyltransferase | 3 | 312 | 1.3E-46 |
| 2 | g7799.t9 | PANTHER | PTHR13271 | UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE | 33 | 423 | 8.4E-35 |
| 1 | g7799.t9 | Pfam | PF00856 | SET domain | 54 | 299 | 1.7E-5 |
| 6 | g7799.t9 | ProSiteProfiles | PS50280 | SET domain profile. | 43 | 299 | 10.195 |
| 3 | g7799.t9 | SUPERFAMILY | SSF82199 | SET domain | 27 | 317 | 5.56E-44 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016279 | protein-lysine N-methyltransferase activity | MF |
| GO:0018023 | peptidyl-lysine trimethylation | BP |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
