General information for g784.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as GPI mannosyltransferase 4.
Parent gene
- The parent gene g784 is located on chr_3: 6017915..6020258 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g784 | g784.t1 | TTS | g784.t1 | 6017684 | 6017684 |
| chr_3 | g784 | g784.t1 | isoform | g784.t1 | 6017915 | 6020258 |
| chr_3 | g784 | g784.t1 | exon | g784.t1.exon1 | 6017915 | 6019818 |
| chr_3 | g784 | g784.t1 | cds | g784.t1.CDS1 | 6017915 | 6019818 |
| chr_3 | g784 | g784.t1 | exon | g784.t1.exon2 | 6020024 | 6020258 |
| chr_3 | g784 | g784.t1 | cds | g784.t1.CDS2 | 6020024 | 6020258 |
| chr_3 | g784 | g784.t1 | TSS | g784.t1 | 6020332 | 6020332 |
Sequences
>g784.t1 Gene=g784 Length=2139
ATGAAAAATGAATTTGAACAGCCAGAATATGGTGATGATTATGTCAAGAGTTTGTATACA
AAGTCAGAGAATGATCAAAAAGTACAAAAAAGAAGAAAATTTGTGAAACGAAGGGAAAAT
TTTAGTTTATTTACTTATTTTTTCTTCATTTTAATAAGAATTGTTATGGTTTTCTTACCG
CAATATGGCTATATCCATCCAGATGAGTTTTTTCAAACGACTGAAGTGATAACAGGTGAA
GTCTTTGAGTTGGAGGCAACAAGAACTTGGGAATTCAATAGTACAATGCCGATAAGAAGT
TATGCGATACCGTTCGTTTGTTTTAAAATACCAATGATTTTTCTCAAATTTGTGCTGATG
AGTATAAAGACTATTTCTGGTGTTGATCTTTTAAGTACTTACACTTTGCTGGTGTTTCCA
CGATTAATCATGTTACTTATTTCGTTCATCAATGATTATAGCGTCTATAAAATATGTCGA
GCATATAATTTACGTTATGATATCAGACTTGTAACATTAGCAAGTTCAGCAGTGATTTTG
ACTTTTGGCATTCGAACATTTTCAAACACAATAGAGATGGCACTTTGCTCTTTTCTGTTG
CATCTCATAAGCGATTGTATGGTGCTTAGTAACACCGTCATTTATCAAAAAGAATTTCTG
GAGGAAAAATATGAGTCGGCAAGCAACATAGGCGAGCGTGTGAAATATTTCAAGATGAGA
ATGTCTCTGCCTCATCATTCATACAGCAAATGCGCAATTTTATCGTCAATTTGCGTTATC
GGAATATTCAATCGACCCACGTTCATATGCTTTGCATTACCACTTATATTCTTCTGGATG
TTGCGCGGCATGGGCATATCAAGAACTGTCACATTTACTGACTTCAATTTACGTATTTTG
TTCTTTATACTGAGTGGATTACCAGCATTTTGCACGATTGTCTTCATTGACTCACTCTAT
TATGGCTACTTATCACTTGCACAAGTTTACATTCTTGACATAACCATTTATAGCTTCCTC
GTCACGCCCGTAAATTTTATCCGATATAATATTAATTCCAGCAATACTGCAGCTCATGGT
GAGCATCCAAGATGGTTGCATTTGCTTATTAACATTCCGCTACTGTACAACATACTAGGA
ATTATTACTATTGCATCATTTGGTAATATGCTTTATAAATTCTGCAAAAAGGAATTTCAA
AATCTTCCTCAATCACAATCATTTATGTTTGTTATGACTGCGGCAATATTTGCGCCAGTT
TTTATGCTTTCGTTATTTAACCATCAAGAGCCAAGATTTCTTATTCCTATTACAATTCCA
ATTATTTTATTACATTCACCAAAGTTAATCACAGGAGTTAATCTTACAAATTTCATGCGA
GAATCTAAATGGAATTTTCTTCGGTATTTGTCCAATTTCATCAATATAACGATAAGCGGA
AGATTCATTCTAAAAGTTTGGTATACAATGAACATCTTATCGACGCTCTTTTTCGGCTTT
ATTCATCAAGCGGGCGTGATTCAGATGAATGAGTATATGTCAACATATAGCCAACAATCT
TTGAGACAACATTCACAAATTCATCTTGTTACAAGTCACATTTATAAGGTACCAGAATCA
ATGTTTGTGTTACCAAATGCCAACACTATTTATACTGATAGCAATGGAATGAAGTATAAG
AATGCGAGAAGATTTTTTTTGTATGAGTATGATAGTATGGAGGTTGCTGACATGTTTAAA
AGAATGAAAATAATTCTTGATGCTGCGGAAATGAAATTTAAGGTGAAAAACGTTCCATAT
GAAGTGCTCTTGGCTATTCCATTGAGTCGTGCATTTGAACTAAATCAGCTATTCTACAAA
CACTCACATTTGATGAGTTATAAGGAAATACAAGTGTTTTATCCTCATCTCTCAACTGAA
GCTTTTCCCAACATCTATGCAACACATCATCCATGTGAAATTAATACCGATGTCGATGAA
CTTGATCAAACATGTAGCCTCGCAAGCCACAATGACATCCTAAATGATGAGATTTCGGTG
ACAAGTGTTTTAAGACAAGTGTCATCTGTCGTTCATCAATTTGGCCTGACTCTTTATAAG
GTTGAAATAAGAAAGAAGAAAAAGAAACCACAAAATTAA
>g784.t1 Gene=g784 Length=712
MKNEFEQPEYGDDYVKSLYTKSENDQKVQKRRKFVKRRENFSLFTYFFFILIRIVMVFLP
QYGYIHPDEFFQTTEVITGEVFELEATRTWEFNSTMPIRSYAIPFVCFKIPMIFLKFVLM
SIKTISGVDLLSTYTLLVFPRLIMLLISFINDYSVYKICRAYNLRYDIRLVTLASSAVIL
TFGIRTFSNTIEMALCSFLLHLISDCMVLSNTVIYQKEFLEEKYESASNIGERVKYFKMR
MSLPHHSYSKCAILSSICVIGIFNRPTFICFALPLIFFWMLRGMGISRTVTFTDFNLRIL
FFILSGLPAFCTIVFIDSLYYGYLSLAQVYILDITIYSFLVTPVNFIRYNINSSNTAAHG
EHPRWLHLLINIPLLYNILGIITIASFGNMLYKFCKKEFQNLPQSQSFMFVMTAAIFAPV
FMLSLFNHQEPRFLIPITIPIILLHSPKLITGVNLTNFMRESKWNFLRYLSNFINITISG
RFILKVWYTMNILSTLFFGFIHQAGVIQMNEYMSTYSQQSLRQHSQIHLVTSHIYKVPES
MFVLPNANTIYTDSNGMKYKNARRFFLYEYDSMEVADMFKRMKIILDAAEMKFKVKNVPY
EVLLAIPLSRAFELNQLFYKHSHLMSYKEIQVFYPHLSTEAFPNIYATHHPCEINTDVDE
LDQTCSLASHNDILNDEISVTSVLRQVSSVVHQFGLTLYKVEIRKKKKKPQN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g784.t1 | PANTHER | PTHR22760:SF3 | GPI MANNOSYLTRANSFERASE 4 | 47 | 701 | 2.9E-129 |
| 3 | g784.t1 | PANTHER | PTHR22760 | GLYCOSYLTRANSFERASE | 47 | 701 | 2.9E-129 |
| 1 | g784.t1 | Pfam | PF03901 | Alg9-like mannosyltransferase family | 45 | 543 | 5.9E-86 |
| 16 | g784.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 39 | - |
| 37 | g784.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 40 | 59 | - |
| 23 | g784.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 60 | 100 | - |
| 38 | g784.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 101 | 119 | - |
| 15 | g784.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 120 | 130 | - |
| 30 | g784.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 131 | 150 | - |
| 22 | g784.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 151 | 169 | - |
| 29 | g784.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 170 | 187 | - |
| 18 | g784.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 188 | 193 | - |
| 36 | g784.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 194 | 215 | - |
| 26 | g784.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 216 | 251 | - |
| 39 | g784.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 252 | 278 | - |
| 19 | g784.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 279 | 298 | - |
| 28 | g784.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 299 | 321 | - |
| 25 | g784.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 322 | 326 | - |
| 31 | g784.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 327 | 347 | - |
| 20 | g784.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 348 | 367 | - |
| 33 | g784.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 368 | 388 | - |
| 24 | g784.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 389 | 407 | - |
| 34 | g784.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 408 | 426 | - |
| 21 | g784.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 427 | 432 | - |
| 32 | g784.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 433 | 454 | - |
| 27 | g784.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 455 | 465 | - |
| 35 | g784.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 466 | 484 | - |
| 17 | g784.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 485 | 712 | - |
| 8 | g784.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 40 | 62 | - |
| 7 | g784.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 97 | 119 | - |
| 12 | g784.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 131 | 153 | - |
| 9 | g784.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 168 | 187 | - |
| 14 | g784.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 194 | 216 | - |
| 11 | g784.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 257 | 279 | - |
| 5 | g784.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 299 | 321 | - |
| 4 | g784.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 325 | 347 | - |
| 13 | g784.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 368 | 390 | - |
| 10 | g784.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 405 | 427 | - |
| 6 | g784.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 484 | 506 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016757 | glycosyltransferase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K08098 (GPI mannosyltransferase 4 [EC:2.4.1.-])
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
