Gene loci information

Transcript annotation

  • This transcript has been annotated as Pre-mRNA-processing-splicing factor 8.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7840 g7840.t1 TSS g7840.t1 26386507 26386507
chr_2 g7840 g7840.t1 isoform g7840.t1 26386900 26394988
chr_2 g7840 g7840.t1 exon g7840.t1.exon1 26386900 26388020
chr_2 g7840 g7840.t1 cds g7840.t1.CDS1 26386900 26388020
chr_2 g7840 g7840.t1 exon g7840.t1.exon2 26388393 26389027
chr_2 g7840 g7840.t1 cds g7840.t1.CDS2 26388393 26389027
chr_2 g7840 g7840.t1 exon g7840.t1.exon3 26389141 26389320
chr_2 g7840 g7840.t1 cds g7840.t1.CDS3 26389141 26389320
chr_2 g7840 g7840.t1 exon g7840.t1.exon4 26389378 26390385
chr_2 g7840 g7840.t1 cds g7840.t1.CDS4 26389378 26390385
chr_2 g7840 g7840.t1 exon g7840.t1.exon5 26390597 26391170
chr_2 g7840 g7840.t1 cds g7840.t1.CDS5 26390597 26391170
chr_2 g7840 g7840.t1 exon g7840.t1.exon6 26391233 26391388
chr_2 g7840 g7840.t1 cds g7840.t1.CDS6 26391233 26391388
chr_2 g7840 g7840.t1 exon g7840.t1.exon7 26391452 26391915
chr_2 g7840 g7840.t1 cds g7840.t1.CDS7 26391452 26391915
chr_2 g7840 g7840.t1 exon g7840.t1.exon8 26391979 26392235
chr_2 g7840 g7840.t1 cds g7840.t1.CDS8 26391979 26392235
chr_2 g7840 g7840.t1 exon g7840.t1.exon9 26392301 26394988
chr_2 g7840 g7840.t1 cds g7840.t1.CDS9 26392301 26394988
chr_2 g7840 g7840.t1 TTS g7840.t1 26395092 26395092

Sequences

>g7840.t1 Gene=g7840 Length=7083
ATGAATCCATATATTTTGCCCGGAATGGGTGGGCCACCTGGTGGGCCTCAAAATCCTTGG
GCAGCACAATTAATGGCTCAACAAGCAATGATGGCACAACAAATGCATGCTCAACAGCTT
GCAGCAACACAAATTCAAATACCACCAACAGGAGGAATGGACTGGAACTTTAGTAATGCA
CCTACACCACAAAAACCAGAGACAATCAGTGAAGAAAAACTTCAAGAAAAGTCATTGAAA
TGGCAGCAACTTCAATCGAAAAGATTTGCAGAGAAGAGAAAATTTGGTTTTGTTGATGCA
CAAAAAGCAGATATGCCAGCAGAGCATGTAAGAAAAATTATCAGAGATCATGGTGATATG
ACAAGCAGAAAATATCGTCACGATAAGCGAGTGTATTTGGGCGCATTAAAATATATGCCA
CATGCTGTAATGAAACTACTTGAAAATATGCCTATGCCATGGGAACAAATAAGAGATGTT
TCAGTTCTCTATCATATTACTGGCGCTATCACATTTGTAAATGAAATTCCTTGGGTAATT
GAGCCAGTTTATATAGCTCAATGGGGAACAATGTGGATTATGATGAGAAGAGAAAAGAGA
GATCGTCGACATTTCAAAAGAATGCGATTCCCGCCATTTGATGATGAAGAACCGCCATTA
GATTATGCTGACAATGTTCTCGATGTTGAACCTTTAGAAGCAATTCAGATTGATTTGGAT
CCAGATGAAGATGCAAGTGTATGTGAATGGCTTTATGATCATAAACCTCTTGTTGGTACA
CCTTATGTAAATGGATCAACTTTTAGACGATGGAATTTGACATTACCTCAAATGGCAACA
TTATATCGTTTAGCCAATCAACTTTTGACTGATTTAGTTGATACAAACTTCTTCTATTTG
TTTGATCCAAAAAGTTTCTTTACTGCAAAAGCTCTTAATATGGCAATTCCTGGTGGACCG
AAATTTGAACCACTCATTAAAGATCATAATTTGGGTGATGAAGACTGGAATGAATTCAAT
GATATCAATAAAATCATTATTCGTCAACCCATCAGAACTGAATATCGTATTGCTTTTCCA
TATCTTTACAATAACATGCCTCTTTTTGTACATCTCTCTTGGTATCACACACCAAATGTT
GTTTACATCAAAACTGAAGATCCAGATTTGCCTGCATTCTACTTTGATCCATTAATTAAT
CCAATTGCTCATCGACATGGTGTTAAATCATCAGACCCTTTGCCAGAAGATGACGAAGAA
TTTTCATTGCCTGATGAAGTTCAACCATTTTTGCAAGATACACCTTTATACACGGACAAC
ACAGCAAACGGTATTGCATTATTGTGGGCTCCTAGACCATTCAATATGAGATCAGGTCGT
TGTCGTCGTGCAATTGATGTACCTTTAGTTAAAAGCTGGTACAAAGAACATTGTCCTCCT
GGTAATCCAGTAAAAGTCAGAGTCAGTTATCAAAAATTACTCAAGTATTATGTCTTGAAT
GCGCTCAAACATCGACGTCCTAAACCACAAAAGAAGCGCTACTTGTTTAGATCATTTAAA
GCTACTAAATTCTTCCAAACTACAACATTGGATTGGGTAGAAGCTGGTTTACAAGTTTGC
AGACAAGGATATAATATGCTAAACTTGTTGATTCATCGCAAAAATCTTAATTATCTTCAT
CTCGACTATAACTTTAATTTGAAACCAGTTAAGACACTTACAACAAAAGAAAGAAAGAAA
TCACGATTCGGAAATGCTTTCCATTTATGTCGTGAAATTCTACGTTTGACAAAATTGATT
ATTGATTCACATGTTCAATATCGTCTGAATAATGTTGATGCTTTTCAACTTGCTGATGGT
CTCCAATATATTTTCGCCCATGTTGGTCAACTCACTGGAATGTATCGTTATAAATACAAA
CTTATGAGACAAATTCGCAAAGGACCTGGTTGTGGATTTTGGGCTCCAGGCTGGAGAGTT
TGGTTGTTCTTTATGCGTGGAATTACACCTTTACTTGAAAGATGGTTGGGAAATTTGCTC
TCACGTCAATTCGAAGGTCGTCACAGTAAGGGTGTTGCAAAAACAGTCACTAAACAACGT
GTAGAATCCCATTTCGATTTGGAATTGAGAGCATCAGTAATGCATGATATTGTTGACATG
ATGCCAGAAGGAATTAAGCAAAATAAAGCAAGAACAATCCTTCAGCATTTATCTGAAGCA
TGGAGATGTTGGAAAGCAAATATTCCTTGGAAAGTTCCTGGTCTACCAATTCCAATTGAG
AACATGATTCTTCGCTATGTGAAGATGAAGGCTGATTGGTGGACAAATACAGCTCATTAC
AATCGTGAGAGAATCCGTCGTGGTGCAACTGTTGATAAGACTGTATGTAAGAAAAATTTG
GGAAGATTAACTCGCTTATATTTGAAGGCTGAACAAGAAAGGCAACACAATTATTTGAAA
GATGGTCCTTATATTTCACCTGAGGAAGCTGTTGCAATTTACACAACAACAGTTCATTGG
CTAGAATCAAGAAGATTTGCACCAATTCCTTTCCCACCTTTGTCGTACAAACACGATACA
AAATTGTTGATTCTTGCTCTTGAGCGTTTAAAGGAAGCATACAGTGTTAAGTCAAGACTG
AATCAAAGTCAAAGAGAAGAACTTGGATTGATTGAACAAGCATATGATAATCCTCATGAA
GCATTATCAAGAATTAAGAGACATTTGCTTACACAACGTGCATTTAAAGAAACTGGCATT
GAATTTATGGATTTATACAGTCATTTGATACCGGTTTATGATGTTGAACCATTGGAAAAA
ATTACTGATGCATATTTGGATCAATATTTATGGTATGAAGCTGACAAGCGACGATTGTTT
CCACCATGGATTAAGCCTAGTGATACTGAACCACCACCTCTTTTGGTCTACAAATGGTGT
CAAGGTGTTAACAATCTTCAAGATGTTTGGGATGTATCTGAGGGTGAATGCAATGTATTG
TTAGAGTCACGTTATGAGAAGCTCTACGAGAAAATTGATTTAACATTGCTCAATCGTTTG
CTACGTTTAATTGTGGATCACAATATTGCTGATTATATGACATCTAAGAATAACGTTGTA
ATTAACTATAAGGATATGAATCACACTAACAGTTACGGAATTATTCGTGGTCTTCAATTT
GCATCATTTATAACACAATATTATGGACTCGTGTTGGATTTACTTGTTCTTGGATTGCAA
CGTGCTAGTGAAATGGCAGGTCCACCTCAAATGCCCAATGATTTCTTAACTTTCCAAGAT
TCTGCTGTCGAAACTAGTCATCCTATTCGACTTTATTGTCGTTATGTTGATAAAATGCAC
ATTTTCTTTAGATTCACAGCAGAAGAAGCACGAGAATTGATTCAACGCTATCTCACAGAG
CATCCAGATCCTAATAATGAAAATATTGTCGGATACAACAACAAGAAGTGCTGGCCAAGA
GATGCACGTATGCGTTTAATGAAGCACGATGTCAATTTAGGACGAGCTGTTTTCTGGGAC
ATTAAGAATCGTTTACCACGTTCAGTAACTACTGTTAGTTGGGATAATACATTTGTTTCT
GTATATTCAAAAGATAATCCTAATTTGCTATTTAACATGTGCGGATTTGAATGTAGAATT
TTGCCAAAATGCCGATTACAACATGAAGAATTTACTCATCGTGATGGTGTATGGAATTTG
CAAAATGAAGTAACAAAAGAGAGAACAGCACAATGCTTCTTACGTGTCGATGATGAATCA
TTGAATCGTTTCCATAATCGTGTTAGACAAATTTTGATGGCATCAGGATCAACAACATTC
ACGAAAATTGTAAATAAATGGAACACAGCTCTTATTGGTCTAATGACTTACTTCAGAGAG
TCAGTAGTAAATACACAAGAATTGCTTGATTTGCTTGTAAAGTGCGAAAATAAAATTCAA
ACACGTATCAAGATTGGTCTTAACTCAAAAATGCCTTCGAGATTTCCACCAGTTGTTTTT
TACACACCAAAAGAATTGGGTGGTCTTGGTATGCTTTCAATGGGTCACGTTTTGATTCCG
CAATCAGATTTACGTTGGTCAAAGCAAACAGACTCTGGAATCACTCATTTCCGATCGGGT
ATGTCGCACGATGAAGATCAATTGATTCCCAATTTGTATCGATATATTCAACCTTGGGAG
AGTGAATTTATTGACTCACAGCGTGTTTGGGCTGAATATGCATTGAAACGTCAAGAAGCA
AATGCACAAAGCAGACGATTGACATTAGAAGATTTAGAAGACAGTTGGGATCGTGGTGTT
CCACGTATTAACACACTTTTCCAAAAGGATCGTCATACTCTTGCCTATGATAAAGGTTGG
CGCATTCGAACTGAGTTTAAACAATATCAAGTTTTGAAACAAAATCCTTTCTGGTGGACA
CATCAACGTCACGATGGAAAACTTTGGAATTTGAACAATTATCGTACAGATATGATTCAA
GCATTGGGTGGAGTTGAAGGAATTCTCGAGCATACATTATTTAAGGGCACATATTTCCCT
ACATGGGAAGGTTTGTTCTGGGAAAAAGCATCAGGATTTGAAGAGTCAATGAAATATAAA
AAACTCACAAATGCACAGCGCTCTGGTTTGAACCAAATTCCAAATCGTCGTTTCACTCTC
TGGTGGTCGCCAACAATCAATCGTGCAAACGTTTATGTTGGCTTCCAAGTACAACTCGAT
TTAACTGGTATTTTCATGCACGGCAAAATTCCAACTTTGAAAATCTCACTCATTCAAATT
TTCCGTGCTCACTTGTGGCAGAAAATTCACGAATCAATCGTCATGGATTTATGTCAAGTA
TTCGATCAAGAATTGGATGCACTAGAAATTGAAACTGTGCAAAAAGAAACTATTCATCCT
CGTAAATCATACAAAATGAACTCGTCTTGCGCTGATATTCTTCTTTTCCCTGCATATAAA
TGGAACGTATCACGTCCATCACTTTTAGCTGATTCAAAGGACACAATGGACAATACTACA
ACACAGAAATATTGGCTTGATGTTCAATTGCGTTGGGGTGATTATGATTCTCACGATATT
GAACGTTATGCTAGAGCAAAGTTCTTGGATTATACAACCGATAATATGTCAATCTATCCA
TCACCAACAGGTGTCCTAATCGCGATTGATTTAGCATATAATTTACACAGTGCTTTCGGT
AATTGGTTCCCAGGCTGCAAGCCGCTCATTCAACAAGCTATGGCTAAAATTATGAAAGCA
AATCCTGCGTTATATGTATTGCGCGAACGTATCAGAAAAGCTTTGCAATTATACAGTTCA
GAGCCAACTGAACCTTATTTGTCGTCACAAAATTATGGTGAATTGTTTTCAAATCAAATT
ATTTGGTTCGTTGATGATACAAATGTATATCGTGTAACAATTCACAAAACTTTTGAAGGA
AACTTGACAACGAAGCCGATTAACGGTGCTATCTTTATTTTCAATCCTCGTACAGGACAA
CTTTTCTTGAAAATTATTCATACATCTGTGTGGGCAGGTCAAAAACGTTTGGGTCAGCTA
GCCAAGTGGAAAACTGCTGAAGAAGTTGCTGCTTTAATTCGTTCATTACCCGTTGAAGAA
CAGCCAAAACAAATTATTGTTACACGTAAAGGAATGTTGGATCCACTTGAGGTTCACTTG
CTTGATTTCCCCAATATTGTCATCAAGGGTTCAGAATTACAGTTACCATTCCAAGCATGC
TTAAAAGTTGAAAAGTTTGGTGATTTGATTTTGAAGGCGACAGAGCCACAAATGGTTCTA
TTTAACTTGTACGACGACTGGTTGAAAACAATCTCTTCATATACTGCATTTTCTCGTCTT
ATTCTTATTCTTCGTGCTCTTCATGTTAATACGGAGAGAACAAAAGTTATTTTGAAACCA
GATAAGACTACAATCACTGAAGCTCATCATATTTGGCCAACATTGAGTGATGAAGAATGG
ATTAAGGTTGAGGTACAATTGAAAGACTTAATTTTGGCTGATTATGGCAAGAAGAATAAT
GTAAATGTAGCATCATTAACACAATCAGAAATTCGTGATATTATTTTGGGTATGGAAATT
TCAGCACCTTCGGCACAGCGTCAACAAATTGCTGAAATTGAGAAACAAACAAAAGAGCAA
TCACAACTAACTGCTACAACTACGAGAACAACAAACAAACATGGTGATGAAATTATTACT
TCGACTACATCAAACTATGAAACACAGAGCTTTAGTTCCAAGACAGAATGGAGAATTCGT
GCTATCTCAGCCACTAATTTACATCTCCGTACAAATCACATTTATGTTAGCTCTGATGAT
ATTAAAGAAACTGGCTATACATATATTTTACCGAAGAATATTTTGAAGAAATTTGTCACC
ATATCTGATCTTCGTGCTCAAATTGCTGGTTATTTGTATGGTGTGAGCCCACCAGATAAT
CCACAAGTTAAAGAAATTCGTTGTATTGTAATGCCACCACAATGGGGAACTCATCAAGTA
ATTAACTTGCCAAATGCTCTACCGAATCATCAATATTTAAAAGATATGGAACCTCTTGGA
TGGATTCATACGCAACCTAATGAATTGCCACAATTATCACCTCAGGATATTACAACACAT
GCAAAAATAATGTCAGAAAATCCTGTGTGGGATGGTGAAAAAACAATTATAATTACTTGC
TCATTTACACCAGGTTCATGCTCGCTAACTGCATATAAATTGACACCTTCCGGTTTTGAA
TGGGGTACAAAGAATACTGACAAAGGAAATAATCCAAAAGGCTATTTGCCAAGTCACTAC
GAGCGTGTTCAAATGCTATTGTCAAACAAATTTCTTGGCTTCTTCATGGTTCCAGCACAA
GGCAGTTGGAACTATAACTTCATGGGTGTAAGACATGATCCTAACATGAAATATGATTTA
ATGCTTTCAAATCCTAAAGAATTCTATCATGAAGTTCATAGACCAGCTCATTTCTTACTC
TTCTCAAATTTGGAAGATGCAAGCGATGGAACTGGAGCAGATCGTGAAGATGTATTTGCA
TAA

>g7840.t1 Gene=g7840 Length=2360
MNPYILPGMGGPPGGPQNPWAAQLMAQQAMMAQQMHAQQLAATQIQIPPTGGMDWNFSNA
PTPQKPETISEEKLQEKSLKWQQLQSKRFAEKRKFGFVDAQKADMPAEHVRKIIRDHGDM
TSRKYRHDKRVYLGALKYMPHAVMKLLENMPMPWEQIRDVSVLYHITGAITFVNEIPWVI
EPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNVLDVEPLEAIQIDLD
PDEDASVCEWLYDHKPLVGTPYVNGSTFRRWNLTLPQMATLYRLANQLLTDLVDTNFFYL
FDPKSFFTAKALNMAIPGGPKFEPLIKDHNLGDEDWNEFNDINKIIIRQPIRTEYRIAFP
YLYNNMPLFVHLSWYHTPNVVYIKTEDPDLPAFYFDPLINPIAHRHGVKSSDPLPEDDEE
FSLPDEVQPFLQDTPLYTDNTANGIALLWAPRPFNMRSGRCRRAIDVPLVKSWYKEHCPP
GNPVKVRVSYQKLLKYYVLNALKHRRPKPQKKRYLFRSFKATKFFQTTTLDWVEAGLQVC
RQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLI
IDSHVQYRLNNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMRQIRKGPGCGFWAPGWRV
WLFFMRGITPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHFDLELRASVMHDIVDM
MPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPIPIENMILRYVKMKADWWTNTAHY
NRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYISPEEAVAIYTTTVHW
LESRRFAPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHE
ALSRIKRHLLTQRAFKETGIEFMDLYSHLIPVYDVEPLEKITDAYLDQYLWYEADKRRLF
PPWIKPSDTEPPPLLVYKWCQGVNNLQDVWDVSEGECNVLLESRYEKLYEKIDLTLLNRL
LRLIVDHNIADYMTSKNNVVINYKDMNHTNSYGIIRGLQFASFITQYYGLVLDLLVLGLQ
RASEMAGPPQMPNDFLTFQDSAVETSHPIRLYCRYVDKMHIFFRFTAEEARELIQRYLTE
HPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVSWDNTFVS
VYSKDNPNLLFNMCGFECRILPKCRLQHEEFTHRDGVWNLQNEVTKERTAQCFLRVDDES
LNRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFRESVVNTQELLDLLVKCENKIQ
TRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDSGITHFRSG
MSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEANAQSRRLTLEDLEDSWDRGV
PRINTLFQKDRHTLAYDKGWRIRTEFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQ
ALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTL
WWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQV
FDQELDALEIETVQKETIHPRKSYKMNSSCADILLFPAYKWNVSRPSLLADSKDTMDNTT
TQKYWLDVQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAFG
NWFPGCKPLIQQAMAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQI
IWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQL
AKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQAC
LKVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNTERTKVILKP
DKTTITEAHHIWPTLSDEEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEI
SAPSAQRQQIAEIEKQTKEQSQLTATTTRTTNKHGDEIITSTTSNYETQSFSSKTEWRIR
AISATNLHLRTNHIYVSSDDIKETGYTYILPKNILKKFVTISDLRAQIAGYLYGVSPPDN
PQVKEIRCIVMPPQWGTHQVINLPNALPNHQYLKDMEPLGWIHTQPNELPQLSPQDITTH
AKIMSENPVWDGEKTIIITCSFTPGSCSLTAYKLTPSGFEWGTKNTDKGNNPKGYLPSHY
ERVQMLLSNKFLGFFMVPAQGSWNYNFMGVRHDPNMKYDLMLSNPKEFYHEVHRPAHFLL
FSNLEDASDGTGADREDVFA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
19 g7840.t1 CDD cd13838 RNase_H_like_Prp8_IV 1790 2040 0.0
20 g7840.t1 CDD cd08056 MPN_PRP8 2091 2341 1.5834E-171
18 g7840.t1 Coils Coil Coil 1415 1435 -
17 g7840.t1 Gene3D G3DSA:1.20.58.1750 - 1208 1327 8.6E-63
14 g7840.t1 Gene3D G3DSA:3.90.1570.40 - 1605 1776 3.0E-94
16 g7840.t1 Gene3D G3DSA:3.30.420.230 - 1785 1945 7.1E-95
15 g7840.t1 Gene3D G3DSA:1.20.80.40 - 1946 2044 1.2E-50
13 g7840.t1 Gene3D G3DSA:3.40.140.10 Cytidine Deaminase 2082 2360 1.8E-143
9 g7840.t1 PANTHER PTHR11140:SF0 PRE-MRNA-PROCESSING-SPLICING FACTOR 8 65 2358 0.0
10 g7840.t1 PANTHER PTHR11140 PRE-MRNA SPLICING FACTOR PRP8 65 2358 0.0
6 g7840.t1 Pfam PF08082 PRO8NT (NUC069), PrP8 N-terminal domain 102 253 3.9E-85
5 g7840.t1 Pfam PF08083 PROCN (NUC071) domain 439 825 2.6E-210
3 g7840.t1 Pfam PF10598 RNA recognition motif of the spliceosomal PrP8 1010 1100 8.0E-48
1 g7840.t1 Pfam PF10597 U5-snRNA binding site 2 of PrP8 1234 1367 3.1E-72
4 g7840.t1 Pfam PF10596 U6-snRNA interacting domain of PrP8 1466 1624 1.1E-89
2 g7840.t1 Pfam PF12134 PRP8 domain IV core 1784 2013 2.5E-130
7 g7840.t1 Pfam PF01398 JAB1/Mov34/MPN/PAD-1 ubiquitin protease 2125 2227 3.7E-9
8 g7840.t1 Pfam PF08084 PROCT (NUC072) domain 2236 2357 4.1E-50
22 g7840.t1 ProSiteProfiles PS50249 MPN domain profile. 2127 2258 22.11
21 g7840.t1 SMART SM00232 pad1_6 2123 2257 2.8E-30
12 g7840.t1 SUPERFAMILY SSF53098 Ribonuclease H-like 1021 1277 4.78E-92
11 g7840.t1 SUPERFAMILY SSF53098 Ribonuclease H-like 1787 2039 8.72E-126

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003723 RNA binding MF
GO:0000398 mRNA splicing, via spliceosome BP
GO:0070122 isopeptidase activity MF
GO:0017070 U6 snRNA binding MF
GO:0005515 protein binding MF
GO:0005681 spliceosomal complex CC
GO:0008237 metallopeptidase activity MF
GO:0030623 U5 snRNA binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values