General information for g7853.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7853 is located on chr_2: 26420665..26421463 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7853 | g7853.t6 | isoform | g7853.t6 | 26418541 | 26420339 |
| chr_2 | g7853 | g7853.t6 | exon | g7853.t6.exon1 | 26418541 | 26419008 |
| chr_2 | g7853 | g7853.t6 | TTS | g7853.t6 | 26418557 | 26418557 |
| chr_2 | g7853 | g7853.t6 | exon | g7853.t6.exon2 | 26419073 | 26419365 |
| chr_2 | g7853 | g7853.t6 | cds | g7853.t6.CDS1 | 26419353 | 26419365 |
| chr_2 | g7853 | g7853.t6 | exon | g7853.t6.exon3 | 26419483 | 26419607 |
| chr_2 | g7853 | g7853.t6 | cds | g7853.t6.CDS2 | 26419483 | 26419592 |
| chr_2 | g7853 | g7853.t6 | exon | g7853.t6.exon4 | 26419674 | 26420339 |
| chr_2 | g7853 | g7853.t6 | TSS | g7853.t6 | 26420489 | 26420489 |
Sequences
>g7853.t6 Gene=g7853 Length=1552
AAATTTTCCGGTGATGTCGAGTATAACATTGATAAAGAATATACTTTGCATGAATCACAT
TTTAAGTGCGAAGTGACATGTGAAGGATGCTTTCAGCGCTGTGAAAACACTCGTGATCAT
ATTAAGGACGGTCAGGAACATAGCAATTCCGCCGCATGCATCTATCAGCAACAGCTTAAT
AATAAGATTTATCTATGCAAGCGATGTCATCTAGAAAATCGCAGAAGTGTTGTAAAAATA
AATAATGCGAATGGTGATTGGCTAACTAAATACACGTGGGGTATCGGAGCTAATTCAAAA
ATCGATTGTGTTCGTCATGGTGAGATTTATCGCAGTCGATGGTATGGTAACAAAAATCCT
GAAGAAATTTGCGTTCTTTCTGAGGCCGTTCACATTTGGCGTGACGGCTTATCAAGAAAT
CAAGTGCCAACACATTCTGCACAAGCCATTGTTGATGGATTTTCATACATTTCCGATGCT
ATTTCATCAGTTTCTGCACAACCAACAAAGACTGTGACGTCATGGGTAGCAGATAATTTA
GTTAATCCTACATATTGGGTTCCAAATTCTGAAATTATCCATTGTGAGCTATGTAAGACG
AATTTCGAATCGAGTGGATTAAAAATTCATCATTGTCGCAATTGTGGAAAAGGTGTATGC
AATGATTGTTCAAAGAACAGAATGAAAGTTCCACTTAAACTTGGATGGGGATATGATCTC
GTAAGAGTATGCAATCGATGCAGAGATGAATTAATGAAAAATGAAAATGGTAATAATAAT
GATGCAGGTTCAACGTTTCGATGAAAAAACAAAGAATGTGAAAGTGCGAAAATATGGTGA
AGTGATTTTTAATGCAGTTAGCACTGTTGCAGCGGCTTTAGAATATCCTAAAGAACTAAT
TAAAGACAGTGTACGACCTGAATACTGGGCTCGTGATAGCGAGTCACCATCATGTTCATT
GTGTGATCAAGTATTTGGTAATCTTGACGATATGGAGCAATCTAAAATTCGTGAATTGAG
TAGCGCTTCAGGAAATTCATTGGGAAATTCACCAAATCATGTTATTGATATTCGACGACA
TCACTGTCGTGGATGTGGTGCAGCTGTGTGTAATAAATGTTCTACAAATCGAAGACCTGT
TCCTGAAAGAGGATGGAACAATGAAGTTCGAGTTTGTGATAACTGCTGGAAGAAACCAAA
TGCAAAGGACTCATAAAAAAGGCATCCATAATCATATTCATAATTGAATTTCTACTGCGC
TTTTCAACAATGTATTCCATATTATAGATGAAAAAAATAGGTAGCAAAGATTTAATTTTA
AACTATTATAGTCATTATCCTTCTTCGCAGTTCTTTACTTTCAAGCAGAAAAAAAATCAG
ATACTTAGAATAATTTTTTTACAATCATCTAGATCTTTTCTTGTTGTGTTATAATGGAAA
AATATTTATAGAAAAATGAAAATATTTTATTGTATTGAGATGAAATTATTACAATACAAA
AATAGATCCATATTTTAAAATTCTTCAGTTTGCTCTAAAACAAATTATTTTT
>g7853.t6 Gene=g7853 Length=40
MKVPLKLGWGYDLVRVCNRCRDELMKNENGNNNDAGSTFR
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
