General information for g7855.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Frizzled.
Parent gene
- The parent gene g7855 is located on chr_2: 26425054..26425284 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7855 | g7855.t1 | TTS | g7855.t1 | 26424651 | 26424651 |
| chr_2 | g7855 | g7855.t1 | isoform | g7855.t1 | 26424731 | 26425284 |
| chr_2 | g7855 | g7855.t1 | exon | g7855.t1.exon1 | 26424731 | 26424814 |
| chr_2 | g7855 | g7855.t1 | cds | g7855.t1.CDS1 | 26424731 | 26424814 |
| chr_2 | g7855 | g7855.t1 | exon | g7855.t1.exon2 | 26424882 | 26425067 |
| chr_2 | g7855 | g7855.t1 | cds | g7855.t1.CDS2 | 26424882 | 26425067 |
| chr_2 | g7855 | g7855.t1 | exon | g7855.t1.exon3 | 26425123 | 26425284 |
| chr_2 | g7855 | g7855.t1 | cds | g7855.t1.CDS3 | 26425123 | 26425284 |
| chr_2 | g7855 | g7855.t1 | TSS | g7855.t1 | 26425537 | 26425537 |
Sequences
>g7855.t1 Gene=g7855 Length=432
ATGTATAAACTAAAGTTCAGTTTATTAGTACTACTTCTTAAAATATTATTAGTTCTTTCA
AATTATAATGAAAAATGTGAACCAATACAAGTTTCTGTTTGCCAAGATATTCAATTTTAC
AATCAAACAATCTTTCCAAATCTTTTAAACCACACACGACAAGATGAAGCAGCACTAGAA
ATACATCAATACTTGCCTTTAATAAAAATTAACTGTTCACCAAATTTGAAATTATTCTTG
TGTTTACTTTATACTCCGATATGTACAATCTTGGATCATCCCATTCCGCCATGCAGAAGC
TTATGTGAAAGTGCCAGAAACTGTGAAAAAATTATGAACGCTTATGGTTTTTCATGGCCC
GAAATTTTAGAATGCTCAAAATTTCCCGAAGATGGCATAGATATTTGCAATTCATTCAAT
GTAACAGTTTAA
>g7855.t1 Gene=g7855 Length=143
MYKLKFSLLVLLLKILLVLSNYNEKCEPIQVSVCQDIQFYNQTIFPNLLNHTRQDEAALE
IHQYLPLIKINCSPNLKLFLCLLYTPICTILDHPIPPCRSLCESARNCEKIMNAYGFSWP
EILECSKFPEDGIDICNSFNVTV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g7855.t1 | Gene3D | G3DSA:1.10.2000.10 | - | 18 | 141 | 9.8E-40 |
| 2 | g7855.t1 | PANTHER | PTHR11309 | FRIZZLED | 9 | 133 | 2.6E-50 |
| 3 | g7855.t1 | PANTHER | PTHR11309:SF47 | FRIZZLED | 9 | 133 | 2.6E-50 |
| 1 | g7855.t1 | Pfam | PF01392 | Fz domain | 26 | 131 | 1.0E-30 |
| 8 | g7855.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 20 | - |
| 9 | g7855.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 5 | - |
| 10 | g7855.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 6 | 16 | - |
| 11 | g7855.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 17 | 20 | - |
| 7 | g7855.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 21 | 143 | - |
| 13 | g7855.t1 | ProSiteProfiles | PS50038 | Frizzled (fz) domain profile. | 21 | 139 | 26.602 |
| 12 | g7855.t1 | SMART | SM00063 | FRI_4 | 25 | 141 | 7.7E-57 |
| 4 | g7855.t1 | SUPERFAMILY | SSF63501 | Frizzled cysteine-rich domain | 25 | 132 | 6.02E-39 |
| 5 | g7855.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 20 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed