General information for g7888.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as GPI ethanolamine phosphate transferase 3.
Parent gene
- The parent gene g7888 is located on chr_2: 26761959..26763154 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7888 | g7888.t1 | TSS | g7888.t1 | 26758482 | 26758482 |
| chr_2 | g7888 | g7888.t1 | isoform | g7888.t1 | 26758561 | 26761959 |
| chr_2 | g7888 | g7888.t1 | exon | g7888.t1.exon1 | 26758561 | 26758734 |
| chr_2 | g7888 | g7888.t1 | cds | g7888.t1.CDS1 | 26758561 | 26758734 |
| chr_2 | g7888 | g7888.t1 | exon | g7888.t1.exon2 | 26758802 | 26759294 |
| chr_2 | g7888 | g7888.t1 | cds | g7888.t1.CDS2 | 26758802 | 26759294 |
| chr_2 | g7888 | g7888.t1 | exon | g7888.t1.exon3 | 26759351 | 26761959 |
| chr_2 | g7888 | g7888.t1 | cds | g7888.t1.CDS3 | 26759351 | 26761959 |
| chr_2 | g7888 | g7888.t1 | TTS | g7888.t1 | 26762062 | 26762062 |
Sequences
>g7888.t1 Gene=g7888 Length=3276
ATGGCAAACTTAAATTATATTTTCGTTTTAATCATTTTTGTGTCCATCATTTCTTCTGGA
ATTCATATATTTTCTCGAGGCTTTCTATTAACAAGATCGTCGCGAACTGAAAAAAGAAAT
TGTGATAAAATTAACATAAATCTGACTGGAGAACGTTGTTTAAATGATGATAAAAAATCA
TGCAGCAATTTAGATTTTCTGGATGTCTCAAAAAACATCAGTTTTTATGCAGACAAAATT
TGTTTAGAGAGAAAAAGTAAAGTCGTTATATTTCTGATTGATGCATTAAAATATGAATTT
GGGGTTTACGATGAAAACCTAAAGAACCCATTGTCATATCAAAATAAATTACCAATCATA
CATCAACTTTTAAAACAAGAGCCAGAACATACTCGTTTGCTCAAATTTGTCGCTGATCCA
CCAACAACTACTTTACAACGATTAAAAGGCATCACAACTGGTAGTTTGCCTACTTTCATA
GATATGGGATCAAATTTTGCTACACCTGAAATCAATGAGGATAATATTATAGACCAAATA
ATATCAAATAATAAGACAGCAGTCTTTTTAGGAGATCAAACATGGATTGAATTATTCCCT
AAACGATTTAAGAGAGCCTATCCTCATCCGAGCTTCAATATTCATGATCTTGATACTGTC
GATAATGCAATTCTCAAAAATTTACCACAAGAATTAGCAAAAAATGATTGGGATTTGATA
ATTGCTCATTTTCTCGGAGTTGATCATTGTGGTCATAAGTTTGGTCCATATCATAGAGAA
ATGTCACGAAAGCTAACTGAAATGAACGATGTGATTAAAAAATATGTTGAAACAATTGAT
AATGATACAATGCTGATTGTTATGGGTGATCATGGAATGACAGATTCTGGAGATCATGGT
GGAAGTTCTGATGATGAAACAGAAGCTTTATTATTTGCATACTCAAAACACAAACCATTC
ATTTCAAAATCATTTGATAATTATGTTGATAATATTCAACAAATTGATTTAACTTCTACG
CTTTCAACAATTCTCGGTGTTCCAATTCCATTTTCAAACCTTGGTTCAATCAGTTTTCAA
CTTCTTCCAGATATTAGTAATAATGAAGTTCAAAGACGAGAATCATTACTAATGCATTTA
TGGCATAATGCAAAACAAATTAAAAATTATCTTGATGTCTATTCAAATGAACATGATAAA
GTGTTTTCGTATGATGATTTAGATAACATCGATTTAAAATACGAAATGTTTGAATTTCGA
GTAAATACAATATTTTCTGATGAGGGATTTAAAAGTGTCGCTACCGATATAAAGAATAAT
ATGAATAATATGCTAGAAATGTGTAGAAATATTTGGATAAAATTTAATCCCAAATTGATG
ACACAGGGAATGCTTATTACATTTGTAGGAATTTTTACTGCATTCATCATTGTCAACAAT
ATTCCACCACAAGATTTTCATCAAATTCTAAATTCAAAACTTCTCATAACTCAAGCATGC
TCATGTGTTATTGCATCAATAATTGGGTACTTTTTATCTTTTGAACTCGGATATGATGAT
GAAATCATTGCTATACTCTTCATGTCATCTTTATGTAATATTCTATTCTTTGGTTTCGTT
ATTATTCAAAATTGGACAACCATTGTCGATATGATGAGTGCTACAAAGAAAATAATCAAT
CTTGTGCCTCGATTAACTTTTGCATTTTCAATTGTGGTATTCTTCTCAAATAGCTTTATC
ATACAAGAACAGCGTATTCTTTGCTTCTTATTAAGTGTTCAAATTATCTATGCCGTTTAT
GAAATCAGAAGGAGTACGACACTTGCTGAGTTTAAGGGCTTAAAATTCAAATTTTTGCGC
TTGACATTTTTCAAAATTATCACGGTAGCATTGATTTGCATTACATTACTGAGATTATCA
AGTAATTATTTTAAATGTCGAGAAGAACAAGGCGACTGTTGGGATTATTTAACAAACTCT
GAGAATGTGAGTAATGAACCAGATAAAAAATTGAATTTTATACCTGTTATAACGTTGGCC
TTACTAGTGGCACTTGTTAGAGGATTTCTCAAAGCAAATGGCAATTTAACTGGTTTTTCG
CCTCATGTACTTTTAATAAGATTTGGTCCAACAATTTCAGTTATTGCTGCATGTGGCTAT
TTAGTTTTATCACAAAAACAATTGAAAAGACCAATAGTATCATACGTACATCTCGACACA
CTAGCATTGATTGTTTACGGAATATTTCTTCTCGAGATTTTAATAGTTAGCATAAGTCCT
TTACTTATCTATACTCTTCCACGCAATACCGATAAAGTCAATTTAACGAGCTACAATAAC
ATAATACCAGAGCTCTATCGTCACATTAAAAATGTATTCAATGAGCAAAATAAAACTCAA
ATTCCCATCGTATATGGACTAGCAACTGTGTACTCATCAATATTTATAGCTTTTGGAACA
ATTCTTAGCATAATGCTCGCACTTTTACTTGGTGTCAATGTTTGTAATGGATTTTTAATA
GTTCTAACTGTCGGTTTTGGTGTTTTATTTATTTATTCAATCTTACGCTATGAAAGTGCC
ACAACCATAAAAGATTGCCTTCAACCAAGCTTTTCACTTATTGTTACATGGTATCTTCTT
TACTCATATGGATTTTATAGTACATCTCATCAACCTACGATTTCACGAATTGACTGGAAT
GCTGCATTTGTTGGTCGAACAGCCAATTTTGATCATTCAAATATTATTTCTGCAATTTTA
GTTTTATTAAGTACATTTAATTCTAATTTAGTTTTACTCATACTATATCCATTACTAGTT
TTTGCTCCATTTATGATTTACTCAATATGGCCGAATCTTTCATTGAAGACATCATTTGTT
CAAGATAAGAAGGGCAACAACAAAGATGATATGACTTCAGAATATAGAAAAATCACTCTA
AACGATGATGGTGACAGTATTGAATCAACAAGTGTAAAAAGTATAACGCGTGGGGAAATT
TCATTGTATGAAAATGAAAATCTCTTTTTGGGATCTACATTTAAAGTCGGTTGTCAATTG
ATTGTATTGCAAGGCACAAAAACACTTGCCTCAATGATTGCGTGTACAATACTATGTAGA
CATTTAATGGTATGGAAGATATTTGCACCCAGATTCATTTATGAAGGCATTGCGAGTTAC
ATTTCATTCATAGCAATATTAATTGGTTTCATGTTACTCATTCGAGTTCATAAATCCGTA
AAATCATTAGTTAATAAAATTAATAAGAATTGTTAA
>g7888.t1 Gene=g7888 Length=1091
MANLNYIFVLIIFVSIISSGIHIFSRGFLLTRSSRTEKRNCDKININLTGERCLNDDKKS
CSNLDFLDVSKNISFYADKICLERKSKVVIFLIDALKYEFGVYDENLKNPLSYQNKLPII
HQLLKQEPEHTRLLKFVADPPTTTLQRLKGITTGSLPTFIDMGSNFATPEINEDNIIDQI
ISNNKTAVFLGDQTWIELFPKRFKRAYPHPSFNIHDLDTVDNAILKNLPQELAKNDWDLI
IAHFLGVDHCGHKFGPYHREMSRKLTEMNDVIKKYVETIDNDTMLIVMGDHGMTDSGDHG
GSSDDETEALLFAYSKHKPFISKSFDNYVDNIQQIDLTSTLSTILGVPIPFSNLGSISFQ
LLPDISNNEVQRRESLLMHLWHNAKQIKNYLDVYSNEHDKVFSYDDLDNIDLKYEMFEFR
VNTIFSDEGFKSVATDIKNNMNNMLEMCRNIWIKFNPKLMTQGMLITFVGIFTAFIIVNN
IPPQDFHQILNSKLLITQACSCVIASIIGYFLSFELGYDDEIIAILFMSSLCNILFFGFV
IIQNWTTIVDMMSATKKIINLVPRLTFAFSIVVFFSNSFIIQEQRILCFLLSVQIIYAVY
EIRRSTTLAEFKGLKFKFLRLTFFKIITVALICITLLRLSSNYFKCREEQGDCWDYLTNS
ENVSNEPDKKLNFIPVITLALLVALVRGFLKANGNLTGFSPHVLLIRFGPTISVIAACGY
LVLSQKQLKRPIVSYVHLDTLALIVYGIFLLEILIVSISPLLIYTLPRNTDKVNLTSYNN
IIPELYRHIKNVFNEQNKTQIPIVYGLATVYSSIFIAFGTILSIMLALLLGVNVCNGFLI
VLTVGFGVLFIYSILRYESATTIKDCLQPSFSLIVTWYLLYSYGFYSTSHQPTISRIDWN
AAFVGRTANFDHSNIISAILVLLSTFNSNLVLLILYPLLVFAPFMIYSIWPNLSLKTSFV
QDKKGNNKDDMTSEYRKITLNDDGDSIESTSVKSITRGEISLYENENLFLGSTFKVGCQL
IVLQGTKTLASMIACTILCRHLMVWKIFAPRFIYEGIASYISFIAILIGFMLLIRVHKSV
KSLVNKINKNC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 50 | g7888.t1 | CDD | cd16023 | GPI_EPT_3 | 84 | 357 | 3.00445E-155 |
| 18 | g7888.t1 | Gene3D | G3DSA:3.40.720.10 | Alkaline Phosphatase | 79 | 361 | 4.9E-40 |
| 2 | g7888.t1 | PANTHER | PTHR23071 | PHOSPHATIDYLINOSITOL GLYCAN | 7 | 1071 | 1.1E-217 |
| 1 | g7888.t1 | Pfam | PF01663 | Type I phosphodiesterase / nucleotide pyrophosphatase | 207 | 296 | 1.4E-12 |
| 27 | g7888.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 5 | - |
| 49 | g7888.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 6 | 29 | - |
| 25 | g7888.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 30 | 462 | - |
| 46 | g7888.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 463 | 482 | - |
| 33 | g7888.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 483 | 493 | - |
| 36 | g7888.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 494 | 512 | - |
| 22 | g7888.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 513 | 523 | - |
| 43 | g7888.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 524 | 546 | - |
| 31 | g7888.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 547 | 557 | - |
| 44 | g7888.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 558 | 579 | - |
| 23 | g7888.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 580 | 585 | - |
| 47 | g7888.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 586 | 602 | - |
| 28 | g7888.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 603 | 621 | - |
| 35 | g7888.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 622 | 639 | - |
| 26 | g7888.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 640 | 670 | - |
| 38 | g7888.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 671 | 690 | - |
| 32 | g7888.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 691 | 701 | - |
| 48 | g7888.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 702 | 723 | - |
| 24 | g7888.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 724 | 742 | - |
| 37 | g7888.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 743 | 766 | - |
| 34 | g7888.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 767 | 802 | - |
| 40 | g7888.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 803 | 830 | - |
| 21 | g7888.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 831 | 836 | - |
| 39 | g7888.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 837 | 855 | - |
| 30 | g7888.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 856 | 866 | - |
| 42 | g7888.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 867 | 886 | - |
| 19 | g7888.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 887 | 929 | - |
| 45 | g7888.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 930 | 950 | - |
| 29 | g7888.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 951 | 1051 | - |
| 41 | g7888.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1052 | 1074 | - |
| 20 | g7888.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1075 | 1091 | - |
| 17 | g7888.t1 | SUPERFAMILY | SSF53649 | Alkaline phosphatase-like | 86 | 356 | 6.54E-38 |
| 10 | g7888.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 29 | - |
| 14 | g7888.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 459 | 481 | - |
| 9 | g7888.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 494 | 513 | - |
| 6 | g7888.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 523 | 545 | - |
| 5 | g7888.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 558 | 580 | - |
| 15 | g7888.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 618 | 640 | - |
| 4 | g7888.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 671 | 690 | - |
| 16 | g7888.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 705 | 724 | - |
| 13 | g7888.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 744 | 766 | - |
| 11 | g7888.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 801 | 823 | - |
| 12 | g7888.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 830 | 852 | - |
| 8 | g7888.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 867 | 886 | - |
| 3 | g7888.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 928 | 950 | - |
| 7 | g7888.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1052 | 1074 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006506 | GPI anchor biosynthetic process | BP |
| GO:0051377 | mannose-ethanolamine phosphotransferase activity | MF |
| GO:0003824 | catalytic activity | MF |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups | MF |
KEGG
Orthology
- This transcript has been annotated with K05288 (GPI ethanolamine phosphate transferase 3 subunit O [EC:2.7.-.-])
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
