General information for g7892.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7892 is located on chr_2: 26775280..26776443 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7892 | g7892.t2 | TSS | g7892.t2 | 26775146 | 26775146 |
| chr_2 | g7892 | g7892.t2 | isoform | g7892.t2 | 26775280 | 26776443 |
| chr_2 | g7892 | g7892.t2 | exon | g7892.t2.exon1 | 26775280 | 26776443 |
| chr_2 | g7892 | g7892.t2 | cds | g7892.t2.CDS1 | 26775469 | 26776443 |
| chr_2 | g7892 | g7892.t2 | TTS | g7892.t2 | 26776493 | 26776493 |
Sequences
>g7892.t2 Gene=g7892 Length=1164
AGTAAGTGCTAATATTTATATCAAATCGGCTTTGAGAGAAAATAAATTTTTTATTTTAGA
GGACTATTGAAGAGTGAAGTTGATTCAGTAATTAATGGCAAACAATGGGTTCTTTCTTGT
TTTGGACCGTTCAAGGAAAGTTGTGTTGTACCAAATTTTATAACTGATCAATCTTTTGAA
GAAATTAGAATGGGATATATTGAAAACTCAAAGAATGGAAATTTGCAACAATATATCAAT
TTGTTAGCTGCAGAATATAATTCAGCGATTCAAAAGCTAAATGAACTTAAGATGGCATCT
CCTGACACAATACAGTTGATTGCATCAATTTACAATAATTCAATTGATCAGAAGACACCA
ATTGTTTCAAAAGCATCAATCTCTTCTCAACCACAAAATCCTTTTCAATCTTCTAATATT
TTTGGTGGAAGTAATCACCAAACAAACACAGGCATGAGTACATCAAGTATATTTGGAACT
TCTTCAAATATAAGCAATCCATTTCAACAGCAAGCACAAGGAACATCTATTTTTGGTTCA
GCAAGTAGTAATATGCAAACACAGCAGCAAGTTGCTCAAGCTTCTCCATTTTCTTTCGTA
AATGCATCCAGTTCTAACATAACTTCTGCTGTTCAGCAACCGCAAAGTTCAATCTTTACA
CAAAATATTTATGGACAACCGCAGCAACAGCATAATTCAATTTTTGGATCAATGCCAACT
CCACAGTCACAACCAATAGCTAATATTCAACCACAAAATTCTCAATCAATATTTGGTCAA
TCTTTCAATCAACCTTTACAAACTCCTTCAATTTTTGCTTCTCAAACGATTCAAACTCCA
TCAAATCCTTTTCAGCAAGTGCAACAACAAAGCACGACAAATATTTTTGGTGCACAAAAT
ATTCAGCCACAAGCGTCTCAAACACCATTACAACCGAGTAATAACATTTTCCAAATTCAA
CAGACACAACAACAAGTACAAACACAACCATTTGGAGATAATCCATTTCAACAGTCAAAT
GTTCCAACAATTCAGATTAATGACGAGAAATTCTATTCACAACCTGGTGAGTTATCAGCA
GAAGAAAATGAACAATTCCAAGCAGAGAGTTTTACGTTTGGAAAAATTCCTAGAAATCCG
CCTTCAAAAAATTTATGTACCTAA
>g7892.t2 Gene=g7892 Length=324
MGYIENSKNGNLQQYINLLAAEYNSAIQKLNELKMASPDTIQLIASIYNNSIDQKTPIVS
KASISSQPQNPFQSSNIFGGSNHQTNTGMSTSSIFGTSSNISNPFQQQAQGTSIFGSASS
NMQTQQQVAQASPFSFVNASSSNITSAVQQPQSSIFTQNIYGQPQQQHNSIFGSMPTPQS
QPIANIQPQNSQSIFGQSFNQPLQTPSIFASQTIQTPSNPFQQVQQQSTTNIFGAQNIQP
QASQTPLQPSNNIFQIQQTQQQVQTQPFGDNPFQQSNVPTIQINDEKFYSQPGELSAEEN
EQFQAESFTFGKIPRNPPSKNLCT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g7892.t2 | Coils | Coil | Coil | 16 | 36 | - |
| 2 | g7892.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 324 | - |
| 3 | g7892.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 309 | - |
| 1 | g7892.t2 | PANTHER | PTHR46527 | NUCLEOPORIN-LIKE PROTEIN 2 | 3 | 323 | 2.4E-13 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
