General information for g7898.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7898 is located on chr_2: 26811677..26812392 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7898 | g7898.t6 | TTS | g7898.t6 | 26810008 | 26810008 |
| chr_2 | g7898 | g7898.t6 | isoform | g7898.t6 | 26810054 | 26811928 |
| chr_2 | g7898 | g7898.t6 | exon | g7898.t6.exon1 | 26810054 | 26810075 |
| chr_2 | g7898 | g7898.t6 | exon | g7898.t6.exon2 | 26810349 | 26810438 |
| chr_2 | g7898 | g7898.t6 | exon | g7898.t6.exon3 | 26811168 | 26811265 |
| chr_2 | g7898 | g7898.t6 | cds | g7898.t6.CDS1 | 26811228 | 26811265 |
| chr_2 | g7898 | g7898.t6 | exon | g7898.t6.exon4 | 26811412 | 26811564 |
| chr_2 | g7898 | g7898.t6 | cds | g7898.t6.CDS2 | 26811412 | 26811564 |
| chr_2 | g7898 | g7898.t6 | exon | g7898.t6.exon5 | 26811625 | 26811687 |
| chr_2 | g7898 | g7898.t6 | cds | g7898.t6.CDS3 | 26811625 | 26811687 |
| chr_2 | g7898 | g7898.t6 | exon | g7898.t6.exon6 | 26811740 | 26811928 |
| chr_2 | g7898 | g7898.t6 | cds | g7898.t6.CDS4 | 26811740 | 26811926 |
| chr_2 | g7898 | g7898.t6 | TSS | g7898.t6 | 26812424 | 26812424 |
Sequences
>g7898.t6 Gene=g7898 Length=615
GCGTTGATGTCAGCTCTGGTGGTACAGTTGTTTTGGGTGCACAATTCATCAACCAAGTTG
AAGCAACACAACAAAGAATTCCAGTTACAACAGCCGGTATTGTTTTACATCCACAATGGG
ACCCAAGTTTGATTCGCAATGATGTAGCAGTTCTTCATCTTTCAACACCTGCTACACTTT
CTAACATTGTTTCATTAATTGATTTGCCACCTCCTGAAAGTGTAACAACTTTTGAAAATT
TCCCAGCAACAGTTTCCGGATGGGGTAGATTTGATGACAATTTACCTCAATCATCAGATG
TTTTAAGATTTTATCGTGGAACAATATTATCACAAGCCAATTGCATTTTAAGATTTCCTG
GTGTTGTTCAACCAAGTAACATCTGTTTGTCTGGTCTTAATAATGCTGAAAAATCAATCA
AGGTGACTCCGGCGGGCCATTGACCACAACTTACAATGGACGTCATACTCATATTGGAAT
AGTGTCATTTGGATTGGCTTTGGTTTGTGGCCATCTGTATTTGCTCGTACGTCATTCTAC
AATGACTGGATCACAGCAAACACCGTATAAAAAATGCGATAATATCTATTGCATAACGAT
AACATTCATTCTTTA
>g7898.t6 Gene=g7898 Length=146
VDVSSGGTVVLGAQFINQVEATQQRIPVTTAGIVLHPQWDPSLIRNDVAVLHLSTPATLS
NIVSLIDLPPPESVTTFENFPATVSGWGRFDDNLPQSSDVLRFYRGTILSQANCILRFPG
VVQPSNICLSGLNNAEKSIKVTPAGH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g7898.t6 | Gene3D | G3DSA:2.40.10.10 | - | 7 | 65 | 0.0000 |
| 6 | g7898.t6 | Gene3D | G3DSA:2.40.10.10 | - | 66 | 138 | 0.0000 |
| 2 | g7898.t6 | PANTHER | PTHR24250:SF56 | SERINE PROTEASE P96 | 2 | 131 | 0.0000 |
| 3 | g7898.t6 | PANTHER | PTHR24250 | CHYMOTRYPSIN-RELATED | 2 | 131 | 0.0000 |
| 1 | g7898.t6 | Pfam | PF00089 | Trypsin | 8 | 135 | 0.0000 |
| 8 | g7898.t6 | ProSiteProfiles | PS50240 | Serine proteases, trypsin domain profile. | 1 | 146 | 9.5250 |
| 5 | g7898.t6 | SMART | SM00020 | trypsin_2 | 3 | 142 | 0.0013 |
| 4 | g7898.t6 | SUPERFAMILY | SSF50494 | Trypsin-like serine proteases | 7 | 134 | 0.0000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | MF |
| GO:0006508 | proteolysis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed