General information for g7907.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Peptidoglycan-recognition protein 2.
Parent gene
- The parent gene g7907 is located on chr_2: 27010075..27010668 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7907 | g7907.t1 | isoform | g7907.t1 | 27010075 | 27010668 |
| chr_2 | g7907 | g7907.t1 | exon | g7907.t1.exon1 | 27010075 | 27010668 |
| chr_2 | g7907 | g7907.t1 | cds | g7907.t1.CDS1 | 27010075 | 27010668 |
| chr_2 | g7907 | g7907.t1 | TTS | g7907.t1 | 27011360 | 27011360 |
| chr_2 | g7907 | g7907.t1 | TSS | g7907.t1 | NA | NA |
Sequences
>g7907.t1 Gene=g7907 Length=594
ATGACAAAAGACGTGGTTCTGCTTGCAGCATTCGCTTTATTACTTAGCTTAATTCAATTT
GGAATTTTCTGTCCAAGAATAATCACAAGAGCACAATGGGGTGGAAGCGACCCGTTAGTA
AAGATGAAACCACTCATTCTACCAGCGTTTTATTTCATAATTCATCAGAGTTTTGGACCA
ACTTGCTTTAATCAAACATCATGTGTTATTCAAATGAGAAACATTCAAAATTTTCACATT
CACTCACATAAATTGCCTGATATTGGATATAATTTTTGCATTGGGCAAGACGGTAATGTT
TATGAGGGAAGAGGATGGGAAGTTCAAGGCGCTGATGTATCCGGCTTTAGTTCTCATTCT
CTTAGTATATGCTTTATTGGATCGTTCGAAATGAGCATTCCTAACTTCATAACATTCCTA
GCGGCTCAGGAATTAATACTTTGCGGCATAAATAAAGGCTTTGTTTCATCATCCTATTCA
TTAATAGCACACCGGCAGATCAGTGCATTAAATTCACAATGTCCAGGGAATGCTTTACTC
AATGAACTCAAGCGAAATACACGATTCAAAAATAATCCCCAAACAATCAGGTAG
>g7907.t1 Gene=g7907 Length=197
MTKDVVLLAAFALLLSLIQFGIFCPRIITRAQWGGSDPLVKMKPLILPAFYFIIHQSFGP
TCFNQTSCVIQMRNIQNFHIHSHKLPDIGYNFCIGQDGNVYEGRGWEVQGADVSGFSSHS
LSICFIGSFEMSIPNFITFLAAQELILCGINKGFVSSSYSLIAHRQISALNSQCPGNALL
NELKRNTRFKNNPQTIR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g7907.t1 | CDD | cd06583 | PGRP | 48 | 178 | 1.31173E-30 |
| 4 | g7907.t1 | Gene3D | G3DSA:3.40.80.10 | Lysozyme | 22 | 174 | 4.8E-46 |
| 2 | g7907.t1 | PANTHER | PTHR11022 | PEPTIDOGLYCAN RECOGNITION PROTEIN | 24 | 189 | 3.4E-54 |
| 1 | g7907.t1 | Pfam | PF01510 | N-acetylmuramoyl-L-alanine amidase | 51 | 176 | 1.2E-10 |
| 6 | g7907.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 20 | - |
| 7 | g7907.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 4 | - |
| 8 | g7907.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 5 | 15 | - |
| 9 | g7907.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 16 | 20 | - |
| 5 | g7907.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 21 | 197 | - |
| 13 | g7907.t1 | SMART | SM00701 | pgrp | 25 | 168 | 7.1E-48 |
| 14 | g7907.t1 | SMART | SM00644 | ami_2 | 37 | 176 | 7.8E-7 |
| 3 | g7907.t1 | SUPERFAMILY | SSF55846 | N-acetylmuramoyl-L-alanine amidase-like | 24 | 191 | 7.2E-53 |
| 11 | g7907.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 29 | - |
| 12 | g7907.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 44 | 63 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008745 | N-acetylmuramoyl-L-alanine amidase activity | MF |
| GO:0008270 | zinc ion binding | MF |
| GO:0009253 | peptidoglycan catabolic process | BP |
KEGG
Orthology
- This transcript has been annotated with K01446 (peptidoglycan recognition protein)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed