General information for g791.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Patj-like protein.
Parent gene
- The parent gene g791 is located on chr_3: 6056277..6058520 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g791 | g791.t3 | isoform | g791.t3 | 6056277 | 6058520 |
| chr_3 | g791 | g791.t3 | exon | g791.t3.exon1 | 6056277 | 6056975 |
| chr_3 | g791 | g791.t3 | cds | g791.t3.CDS1 | 6056543 | 6056975 |
| chr_3 | g791 | g791.t3 | exon | g791.t3.exon2 | 6057137 | 6057258 |
| chr_3 | g791 | g791.t3 | cds | g791.t3.CDS2 | 6057137 | 6057258 |
| chr_3 | g791 | g791.t3 | exon | g791.t3.exon3 | 6057316 | 6057793 |
| chr_3 | g791 | g791.t3 | cds | g791.t3.CDS3 | 6057316 | 6057793 |
| chr_3 | g791 | g791.t3 | exon | g791.t3.exon4 | 6057872 | 6058520 |
| chr_3 | g791 | g791.t3 | cds | g791.t3.CDS4 | 6057872 | 6058011 |
| chr_3 | g791 | g791.t3 | TSS | g791.t3 | NA | NA |
| chr_3 | g791 | g791.t3 | TTS | g791.t3 | NA | NA |
Sequences
>g791.t3 Gene=g791 Length=1948
AAGAATTGAGTGGAATTTTTGTGAAAAGTGTTGCACCGGGAAGTGCTGCAGACTGTGGAA
AAATTCAAGTTAATGATAGAATCATTGAAGTTGATGGACAATCGTTGCAAGGTTTTTCTA
ATCATCAAGCAGTAGATGTGCTCAAACAGAGTGGAAATGTAGTTAAATTGGTGCTTGAAC
GCTATTTGCGTGGACTGAAATTTGAGCAGTTACAACAAGCAATTGCAGCTAACGAATTAA
TCAAACCTACAACTCCGGTTAAACCAATGACTTCTGCATCACCATCTTCTCGTCGCCAGT
CATTTAATGAAGATCGTTCTAAATTTTTAATGGCAAGAGATTCACTTGAAACCAGAAATC
AAAAAGATTCAATCAACAACGATTATCAAGGACAAGAATCAAGTGTTGACAATGAGGAAG
ATTTAATTAATGAATTGAGTAATCTACATATGCATTCAACACCTAAATCTCAACACAAAT
ATTATGTTGATCCTAAACTTACTAAAGATCAAGAGGCTGCAATAATTAAAAAGTGGAAAT
CAATTCTTGGTTCAGATGATGATAGTAAAATTATTGTCGCTCAAATAAGAAAATTTGCTG
CTTCTAGTGGTCTTGGCATTAGTCTTGAGGGAACAGTTGATATTGAAAGTGGTGTAGAAG
TAAGACCTCATCATTACATTCGTTCAATTTTACCTGAAGGTCCTGTTGGACAAAATAAGC
TTTTGCGATCTGGTGATGAACTTCTTGAGGTCAATAATCAGCGACTTCTTGGTATGAATC
ATATGCAAGTCGTATCGATTTTAAAAGAACTGCCACAAGATGTTCGAATGGTTTGTCGTA
GAGGAATGACTGAAATAATTTCATTCACTGAAGACAATTATCGTAATGCTTTGATCGATC
ATGGACATGCAAATGATAGTAATAATTCAAATACATCACTGCTTTCTGATAGATTAGTCA
AGGCAAAGAGTGATGGCAGCTTAGCCACAGCAGTTGGAAATGGCGATGGTTTCATAAAAA
TGAAATCTCGATCATTAGAACCATTAACGGGATTAGCAATGTGGAGCAGCCAATCTCAAA
TTATAGAATTGGTGAAGGGTGAACGTGGATTAGGTTTCAGTATTTTAGACTATCAAGATC
CATTAGATCCAAATGACACATTGATTGTCATTCGCTCTCTTGTGCCTGGTGGCGTTGCAC
AGTTGGACGGTAGATTAATTCCAGGCGATAGATTATTATTTGTTAATGACACTCGTTTAG
AAAATGCATCACTTGATCAAGCTGTTCAAGCTCTAAAAGGTGCACCGAAAGGAATAGTGA
AAATCGGAATTGCAAAACCTTTACCAATGACTGATTTTATTGAAAGCAAAAATTATTCGG
CCACTGAGAGTTTTCAAGATGAACTAAAACTTAAGAAACCTGATCTTATTACAGAATGAG
AAACACAGCAGCTAATAAAACTTCTCTCATCTATTCATCACTTTATTCAATTTATTGATC
GACATAACAGGAAGAATCATGTCGATAAAAGTGTTATTTAAGCACGCATTTCTTTTAACA
TTCCAATGTTACTTTCATTATTGTTTGTGCAATTATGTTAAAATCCATCTTCCATTTCTT
AATTTATAAGAAGGCATTAACTTAATCAAAAATAACGAAAAAGTTGTTTAGACGAAAAAT
GACATTACTTAATATTATCTAGATAAAAGTGAAGTATTTTTAGAGAATTTAGTATATTTA
TCGTGCACGACACATACCTTTTGCCATTTCACAAAGTTTATATTTCTTTATGTTCAGATT
ATTTTTTATATACACATAACTATCCTACATATATGAATGTAGAATTTTTAATTAAAATGA
CATTAACTAAAAATATATTGTAATGTTTTTTGTGAATTGAGACAAATGTTAATTAAAGAC
AAATATATATATATATTTCATTTATTTA
>g791.t3 Gene=g791 Length=390
MTSASPSSRRQSFNEDRSKFLMARDSLETRNQKDSINNDYQGQESSVDNEEDLINELSNL
HMHSTPKSQHKYYVDPKLTKDQEAAIIKKWKSILGSDDDSKIIVAQIRKFAASSGLGISL
EGTVDIESGVEVRPHHYIRSILPEGPVGQNKLLRSGDELLEVNNQRLLGMNHMQVVSILK
ELPQDVRMVCRRGMTEIISFTEDNYRNALIDHGHANDSNNSNTSLLSDRLVKAKSDGSLA
TAVGNGDGFIKMKSRSLEPLTGLAMWSSQSQIIELVKGERGLGFSILDYQDPLDPNDTLI
VIRSLVPGGVAQLDGRLIPGDRLLFVNDTRLENASLDQAVQALKGAPKGIVKIGIAKPLP
MTDFIESKNYSATESFQDELKLKKPDLITE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g791.t3 | CDD | cd00992 | PDZ_signaling | 102 | 191 | 1.61576E-14 |
| 10 | g791.t3 | CDD | cd00992 | PDZ_signaling | 273 | 351 | 9.39757E-15 |
| 8 | g791.t3 | Gene3D | G3DSA:2.30.42.10 | - | 94 | 195 | 4.2E-21 |
| 7 | g791.t3 | Gene3D | G3DSA:2.30.42.10 | - | 258 | 359 | 7.1E-36 |
| 13 | g791.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - |
| 14 | g791.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 32 | - |
| 3 | g791.t3 | PANTHER | PTHR19964 | MULTIPLE PDZ DOMAIN PROTEIN | 41 | 377 | 3.2E-95 |
| 4 | g791.t3 | PANTHER | PTHR19964:SF44 | PATJ HOMOLOG | 41 | 377 | 3.2E-95 |
| 2 | g791.t3 | Pfam | PF00595 | PDZ domain | 112 | 189 | 1.3E-9 |
| 1 | g791.t3 | Pfam | PF00595 | PDZ domain | 275 | 355 | 1.1E-13 |
| 15 | g791.t3 | ProSiteProfiles | PS50106 | PDZ domain profile. | 104 | 194 | 15.32 |
| 16 | g791.t3 | ProSiteProfiles | PS50106 | PDZ domain profile. | 272 | 350 | 17.129 |
| 12 | g791.t3 | SMART | SM00228 | pdz_new | 114 | 194 | 9.7E-15 |
| 11 | g791.t3 | SMART | SM00228 | pdz_new | 280 | 359 | 3.9E-17 |
| 6 | g791.t3 | SUPERFAMILY | SSF50156 | PDZ domain-like | 104 | 196 | 3.19E-19 |
| 5 | g791.t3 | SUPERFAMILY | SSF50156 | PDZ domain-like | 259 | 363 | 2.8E-23 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
