General information for g7919.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7919 is located on chr_2: 27065139..27067191 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7919 | g7919.t10 | isoform | g7919.t10 | 27065139 | 27066802 |
| chr_2 | g7919 | g7919.t10 | exon | g7919.t10.exon1 | 27065139 | 27066802 |
| chr_2 | g7919 | g7919.t10 | cds | g7919.t10.CDS1 | 27066378 | 27066755 |
| chr_2 | g7919 | g7919.t10 | TSS | g7919.t10 | 27066841 | 27066841 |
| chr_2 | g7919 | g7919.t10 | TTS | g7919.t10 | NA | NA |
Sequences
>g7919.t10 Gene=g7919 Length=1664
AGTTTAGTGAGATTTTATTACAACCAAAAGCAATAAAAGTATTTAAAATGGCTGCTAACT
CAGTTCTACTAGATTTTTCTATAGAACCATCGCGGATTGGTGATGAATTATCGCGAAAGG
ACATCGTGAAAGTGTTCAAAGAAAATTTGGAAAAATATTTTGGCAATTTGAAAATTGTTT
ATGATATGCTTATTGATGATGGTTATATGTGCATTCTAAGTGATAATGCTGGCACTATCT
TTACTATAAGATTCTTTGGCGAAGGTCTAATTACCGTTAACATCGAGTATTTTAAGAAGG
AAAATGACTCCCAAAGAATTTCATTTGAGGTAAAAAAATCATTTCTTTTGCTCACGAGAA
TTTCATTTTCCACATTGGTCCAATCTGGTTTAGAATTTACTCAATTTTCAAAAAAAAAAA
AATGAGAGAAAAATGGAAATTTTACATGTGCGTGTCATTTCACCAACTGGCCATCTCATA
ATCATTTAATATTGTTGTTGTAATTTTTCATGTCAATGATAACCAAATGCTATGGTTATA
TGAATTTGTAATAATTATAGACATTGAGATTCCTCGAAATTAACTTGAGAATGAAGTTAG
AAGCTAAGAGATCAAAGTTATTACCAGCAATTAAGCGAGGAGGCATTGATGTATATCTTA
CTAGTTCAGGTATTGACTCATGTTCTATCTCTGAGCAAGCAAGAAATTTTTCTACATTTC
TCAATTTATTTAGACATAAATTTCTTTTAGTTTTATTTTGCAATTTGTACAGAACTTTAT
GAGAAAGTGAAGAATGCTATTTGATAATTTGAAAAATAAATAATTATTGAAATATTTTAA
AGATAAGGCATTTTGAATCATCTTTAAAATATTTGTTGCATCATCTAAGTTTTCTCTCTA
ATTCATCCATTCAAAATGAGTTCATTAAAGAGCTCATAAAAAGATTTTTGAAGTTAAAAC
AAAATTCCTTTTTTTACTCTAATTTTCAATAAATTTTTTAGTAAAACTGAATCAAATTTA
AATGTTAATCAATGACTTCAAAAATCTAATTCACCTTCAACGTTCTTTATTATTTAACCC
TTTTAATTTTTAATGACTTTAGACACACCAATTCTACTAATCAAATGAACACATATTCAA
ATTATAACTAAGCGCTTTAGTTGGCCATCAATTTGTGGATTTTGAAAGAAAAAATTAATT
TGTGATAATTATTTTTTGCAAACCAACTCAACTCGATCCACAAACTGAACGGAAATTCTA
CAAAATTTATTAATCATGCATTTCATATTTCAACATGTTGACGTTATGTTAATTATTTAA
ACGAAAAATAAAATTTTTTGTAGATGAGAGATAAGAAATATCAAGAGTATGACACTCTAC
TCTTTTAGATTTCATATAGTATCACTTTTCTTCTCTTGTGTCATGTTCTTGAAAGTAAAT
TAAAAATAGTTCTTCTTAGAAATAGCAAATGAGAAAAAATTTATTAGATTTTATGAGATG
GATATTCTTCTCTTAACCAGCTTGGTTCCAAAAAGAACTTTTATTTAACACATGCAAGCT
AAAAAATTTCTTTTTGTTAATTTTTGAAATTGGCTAATAAAAATATTTCCTTCCAAAAAC
ACATAAACATCAAAACATACAAAAAACTATTCCTATCCCCTACA
>g7919.t10 Gene=g7919 Length=125
MAANSVLLDFSIEPSRIGDELSRKDIVKVFKENLEKYFGNLKIVYDMLIDDGYMCILSDN
AGTIFTIRFFGEGLITVNIEYFKKENDSQRISFEVKKSFLLLTRISFSTLVQSGLEFTQF
SKKKK
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
