General information for g793.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as WD repeat-containing protein 36.
Parent gene
- The parent gene g793 is located on chr_3: 6060748..6063516 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g793 | g793.t4 | TTS | g793.t4 | 6060693 | 6060693 |
| chr_3 | g793 | g793.t4 | isoform | g793.t4 | 6060748 | 6062363 |
| chr_3 | g793 | g793.t4 | exon | g793.t4.exon1 | 6060748 | 6062363 |
| chr_3 | g793 | g793.t4 | cds | g793.t4.CDS1 | 6060748 | 6062337 |
| chr_3 | g793 | g793.t4 | TSS | g793.t4 | NA | NA |
Sequences
>g793.t4 Gene=g793 Length=1616
CCAAATTACAAGATGATTATCGAATTATGCCACCAATTAGCAGTTTTACATCTGAGACAA
CTCGTGAAAAACATTGGGATAGTATTGTTGCAATTCATAGAGATCTTGTTGAGGCAACAA
CATGGTCTTTTGATAAAAGAAAAATGGGTGAATTAAAGCTTATGCCTGAAAGATTTAAAG
AAAATAAACGTAAAGATTTCAAGACTTTTGCAACATGTTTAAACATGACACACTGCGGCA
ATTTTGTAATAATTGGCTATTCTTCTGGCGAAGTTGAGAGATTTAATGTTCAATCAGGCA
TACATCGTGCTAATTATGGAAATCCTGCTCATACTAATGATGTTCGTGGTGTTTGGTCAG
ATAATTTAAATCAAGTTGTAATAAGCGGTGGTGTCGATTGTAAACTCAAATTTTGGAATT
TCAAGACAAAAGAAAGCAACAATGCATTTGGAGTGATGAAAATGCAAGACAGTATTTTAT
TTATTCGTGGTCATCGTGAAAGTTCAATGCTATGTGTCGTTCTTGAAGATTTCACCATTT
TAGTAATTGATTATGATACGAAAAATATAGTGAGAAAATTCATAGGACATACAGCTCCAA
TTACTGATGCATGCTTCAGTCCTGATAGTCGTTGGCTCATTACTTCAAGTATGGATTGTA
CAATAAAAACTTGGGATATACCATCATCATATTTAATTGATCAATTCAAAATGTCACAGC
CATGTATTTCTCTAGCAATGTCACCAAGTGGAGATTTTCTAGCAACAGCACATGTAAATT
TCCTTGGAATATATTTGTGGGCTAACAAGAGTTTATATGAACACATTTCACTTCGATCAA
TTGATCCTACAAGTGAAGCAAAAGAAATGGAATTACCTAACATGATGAGTTATGAACAAA
AGTATGATATAATTGACAGATTGAACCTCATTAAAATTGAAAAAGAAGAGGAGGAAGAAG
AAGGAGAATATATTAATTTGGATTATAAGAGTCCAGCTCAAATTGATGATAAATTAATAA
CAATGTCAAAACTTTCAGAAGCAAAATGGAAAAATCTTCTGTCTCTTGACATTATCAAAA
AGCGAAATAAACCGAAAGAGGCATTTAAGAAAGCAAAACAAGCACCATTCTTCCTGCCAA
CTGTAGCAGGTCTGGAATTTGCATTTGATATTGAAAATAATACACAAGACGAAGATCATT
CACGTTTGAAGACTGCTTCAGTAGTAGAAAATTTAACAACATTTGGAATAATTTTAAAGA
AATCATACGAAACAAATGACTATTCAAATTCAATCAGTCATTTAATGACATTAAATCCAT
CATTAATCGACTATGAAATAAGATCATTAGCCCCGTTAGGTGGTGGATCAATAAATTTGA
TGGAAAAATTTCTAGACATGATAATTGAAATGTTGAATACAAATATAAATTTTGAGTTAG
CTCAATCATATTTGGCATTATTTTTAAAATCTCATGATGAAGTTATATGTGAAAATCGTG
CATTGATCGAGAAAATTGAAGAAGTTGAAATAGCTCAAAATAAAGGTTGGTCAGCAATAG
ACGAAAAACTTCTTTATGGCATCGGAGTTGTCAGTAATTTAAGAAACTATTGTTAA
>g793.t4 Gene=g793 Length=529
MPPISSFTSETTREKHWDSIVAIHRDLVEATTWSFDKRKMGELKLMPERFKENKRKDFKT
FATCLNMTHCGNFVIIGYSSGEVERFNVQSGIHRANYGNPAHTNDVRGVWSDNLNQVVIS
GGVDCKLKFWNFKTKESNNAFGVMKMQDSILFIRGHRESSMLCVVLEDFTILVIDYDTKN
IVRKFIGHTAPITDACFSPDSRWLITSSMDCTIKTWDIPSSYLIDQFKMSQPCISLAMSP
SGDFLATAHVNFLGIYLWANKSLYEHISLRSIDPTSEAKEMELPNMMSYEQKYDIIDRLN
LIKIEKEEEEEEGEYINLDYKSPAQIDDKLITMSKLSEAKWKNLLSLDIIKKRNKPKEAF
KKAKQAPFFLPTVAGLEFAFDIENNTQDEDHSRLKTASVVENLTTFGIILKKSYETNDYS
NSISHLMTLNPSLIDYEIRSLAPLGGGSINLMEKFLDMIIEMLNTNINFELAQSYLALFL
KSHDEVICENRALIEKIEEVEIAQNKGWSAIDEKLLYGIGVVSNLRNYC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g793.t4 | Gene3D | G3DSA:2.130.10.10 | - | 1 | 288 | 7.0E-89 |
| 4 | g793.t4 | PANTHER | PTHR22840 | WD REPEAT-CONTAINING PROTEIN 36 | 1 | 527 | 1.8E-160 |
| 3 | g793.t4 | Pfam | PF00400 | WD domain, G-beta repeat | 101 | 131 | 0.036 |
| 2 | g793.t4 | Pfam | PF00400 | WD domain, G-beta repeat | 181 | 217 | 3.9E-9 |
| 1 | g793.t4 | Pfam | PF04192 | Utp21 specific WD40 associated putative domain | 306 | 526 | 7.6E-64 |
| 10 | g793.t4 | ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 118 | 132 | - |
| 11 | g793.t4 | ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 204 | 218 | - |
| 13 | g793.t4 | ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 99 | 226 | 19.116 |
| 14 | g793.t4 | ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 99 | 140 | 9.105 |
| 15 | g793.t4 | ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 185 | 226 | 14.151 |
| 9 | g793.t4 | SMART | SM00320 | WD40_4 | 90 | 131 | 0.38 |
| 8 | g793.t4 | SMART | SM00320 | WD40_4 | 137 | 175 | 350.0 |
| 6 | g793.t4 | SMART | SM00320 | WD40_4 | 178 | 217 | 8.7E-11 |
| 7 | g793.t4 | SMART | SM00320 | WD40_4 | 220 | 259 | 10.0 |
| 5 | g793.t4 | SUPERFAMILY | SSF50978 | WD40 repeat-like | 61 | 260 | 1.1E-33 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0032040 | small-subunit processome | CC |
| GO:0005515 | protein binding | MF |
| GO:0006364 | rRNA processing | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
