General information for g7946.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Autophagy-related protein 13-like protein.
Parent gene
- The parent gene g7946 is located on chr_2: 27162278..27164009 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7946 | g7946.t6 | TSS | g7946.t6 | 27161365 | 27161365 |
| chr_2 | g7946 | g7946.t6 | isoform | g7946.t6 | 27161385 | 27162947 |
| chr_2 | g7946 | g7946.t6 | exon | g7946.t6.exon1 | 27161385 | 27161589 |
| chr_2 | g7946 | g7946.t6 | cds | g7946.t6.CDS1 | 27161450 | 27161589 |
| chr_2 | g7946 | g7946.t6 | TTS | g7946.t6 | 27161581 | 27161581 |
| chr_2 | g7946 | g7946.t6 | exon | g7946.t6.exon2 | 27162274 | 27162634 |
| chr_2 | g7946 | g7946.t6 | cds | g7946.t6.CDS2 | 27162274 | 27162634 |
| chr_2 | g7946 | g7946.t6 | exon | g7946.t6.exon3 | 27162705 | 27162947 |
| chr_2 | g7946 | g7946.t6 | cds | g7946.t6.CDS3 | 27162705 | 27162947 |
Sequences
>g7946.t6 Gene=g7946 Length=809
TTGCAGGAGAATCATATAAGCAAATAAGAATCGGATCGTTGACAACACAGATCGGCACAA
TCACCATGGCAGTCGCATATAGAACAAAAATGACAATTTCACCAACACAAACCGGTCGCG
ATAATACAATCATGTTAAAGAGTGATCATTTCTTAAAAGACCTCAGTCCTAAACATTTAC
GATATACAAATTACAATAAAAAGAACGATAAAAAAGTCATTGACTTAGACAAGCCAATGA
GATGTGGAGCATTTGTTGATGTAAGTAGAATTAGACAGTATACTGAGGAAGATTTCATTC
TGCCAGAAAATCCGCCCTTCAATTGGTTACTAAGGAAGCCACGCGATGAAAATTTAGAGA
GTAAAATTGAAGAGGAGAAACTCTCTAATTCTCAAAATGATGAAAATTCATCACCCACCA
ATAATAATAATCTTAATAGCAGAATAGCTGAAGCAGCTAAAATGTCACAATCACCAAAAG
AGAACAGCGGAACATCACCAAGTTCATTTAAGTCAAGGTGGTCAATGAGAGAGAATAAAG
AGGATGATAAACTGTTAAAAGAATTGCAATTTCCATTTGCAAATCAATCACCCATCGGCG
ATCTCGCAAAATTCTATCGTGAATGCTTCAATGCACCTGCACTCGAGTCATTTGCGTTAG
AGAATGCTGAGCCAGTGTTTGAAGAAGTCGAAGATGATGAAGCAGTAAATGACTTAACGA
AGCAACTAGAGCAATTTGAAACCTCATTAAATGAATTTGACGGTTTAATAACATCGCTAT
GTGAATCAGAGAATCACAATAACAGCTAA
>g7946.t6 Gene=g7946 Length=247
MAVAYRTKMTISPTQTGRDNTIMLKSDHFLKDLSPKHLRYTNYNKKNDKKVIDLDKPMRC
GAFVDVSRIRQYTEEDFILPENPPFNWLLRKPRDENLESKIEEEKLSNSQNDENSSPTNN
NNLNSRIAEAAKMSQSPKENSGTSPSSFKSRWSMRENKEDDKLLKELQFPFANQSPIGDL
AKFYRECFNAPALESFALENAEPVFEEVEDDEAVNDLTKQLEQFETSLNEFDGLITSLCE
SENHNNS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g7946.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 155 | - |
| g7946.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 151 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
