Gene loci information

Transcript annotation

  • This transcript has been annotated as 26S proteasome regulatory subunit 8.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7951 g7951.t13 TSS g7951.t13 27179950 27179950
chr_2 g7951 g7951.t13 isoform g7951.t13 27180725 27181540
chr_2 g7951 g7951.t13 exon g7951.t13.exon1 27180725 27180738
chr_2 g7951 g7951.t13 exon g7951.t13.exon2 27180800 27181176
chr_2 g7951 g7951.t13 cds g7951.t13.CDS1 27180918 27181176
chr_2 g7951 g7951.t13 exon g7951.t13.exon3 27181392 27181540
chr_2 g7951 g7951.t13 cds g7951.t13.CDS2 27181392 27181540
chr_2 g7951 g7951.t13 TTS g7951.t13 27181627 27181627

Sequences

>g7951.t13 Gene=g7951 Length=540
GTCTTATTATATGGTCCGCCAGGTACTGGTAAAACTCTTCTCGCTCGTGCGGTTGCTCAT
CACACAGAATGTACTTTCATTCGTGTTTCTGGATCTGAACTTGTTCAGAAGTTTATAGGA
GAGGGCTCACGTATGGTTCGAGAATTATTCGTAATGGCAAGAGAACATGCACCTTCCATC
ATTTTTATGGATGAAATTGATTCTATCGGTTCATCTCGTATTGAATCTGGCAGCGGTGGT
GATTCTGAAGTACAACGAACAATGTTGGAATTACTTAATCAGCTTGATGGTTTCGAAGCA
ACTAAAAATATTAAGGTCATCATGGCAACGAATCGTATTGACATTTTAGATCAGGCGCTT
TTGAGACCCGGAAGAATTGATAGAAAGATTGAAGTTAAAGGTGTTTGTACTGAAGCTGGC
ATGTACGCTTTGCGTGAACGTCGTGTTCATGTTACACAAGAAGACTTTGAGATGGCTGTT
GCCAAAATTATGCAAAAAGATTCCGAGAAGAATATGTCGATTAAAAAGTTGTGGAAGTAA

>g7951.t13 Gene=g7951 Length=135
MVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNI
KVIMATNRIDILDQALLRPGRIDRKIEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKIM
QKDSEKNMSIKKLWK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g7951.t13 CDD cd00009 AAA 2 88 4.63243E-10
8 g7951.t13 Gene3D G3DSA:3.40.50.300 - 1 87 7.7E-30
9 g7951.t13 Gene3D G3DSA:1.10.8.60 - 88 124 1.5E-8
3 g7951.t13 PANTHER PTHR23073 26S PROTEASOME REGULATORY SUBUNIT 1 87 3.4E-77
5 g7951.t13 PANTHER PTHR23073:SF102 BNAA02G04630D PROTEIN 1 87 3.4E-77
2 g7951.t13 PANTHER PTHR23073 26S PROTEASOME REGULATORY SUBUNIT 87 132 3.4E-77
4 g7951.t13 PANTHER PTHR23073:SF102 BNAA02G04630D PROTEIN 87 132 3.4E-77
1 g7951.t13 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 2 88 4.8E-22
7 g7951.t13 ProSitePatterns PS00674 AAA-protein family signature. 60 78 -
6 g7951.t13 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 2 118 2.42E-26

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0036402 proteasome-activating activity MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed