General information for g7951.t15
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as 26S proteasome regulatory subunit 8.
Parent gene
- The parent gene g7951 is located on chr_2: 27180804..27181540 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7951 | g7951.t15 | TSS | g7951.t15 | 27179950 | 27179950 |
| chr_2 | g7951 | g7951.t15 | isoform | g7951.t15 | 27180804 | 27181540 |
| chr_2 | g7951 | g7951.t15 | exon | g7951.t15.exon1 | 27180804 | 27181176 |
| chr_2 | g7951 | g7951.t15 | cds | g7951.t15.CDS1 | 27180918 | 27181176 |
| chr_2 | g7951 | g7951.t15 | exon | g7951.t15.exon2 | 27181266 | 27181540 |
| chr_2 | g7951 | g7951.t15 | cds | g7951.t15.CDS2 | 27181266 | 27181540 |
| chr_2 | g7951 | g7951.t15 | TTS | g7951.t15 | 27181627 | 27181627 |
Sequences
>g7951.t15 Gene=g7951 Length=648
CCAGGTACTGGTAAAACTCTTCTCGCTCGTGCGGTTGCTCATCACACAGAATGTACTTTC
ATTCGTGTTTCTGGATCTGAACTTGTTCAGAAGTTTATAGGAGAGGGCTCACGTATGGTT
CGAGAATTATTCGTAATGGCAAGAGAACATGCACCTTCCATCATTTTTATGGATGAAATT
GATTCTATCGGTTCATCTCGTATTGAATCTGGCAGCGGTGGTGATTCTGAAGTACAACGA
ACAATGTTGGAATTACTTAATCAGCTTGATGGTTTCGAAGCAACTAAAAATATTAAGGTC
ATCATGGCAACGAATCGTATTGACATTTTAGATCAGGCGCTTTTGAGACCCGGAAGAATT
GATAGAAAGATTGAATTTCCTCCACCTAATGAGGAAGCTCGAGGAGATATTTTAAAGATT
CATTCCCGCAAGATGAATTTGACCCGCGGCATTAATTTAAAAAAGATAGCCGAGTTGATG
CCAGGTGCTTCGGGCGCAGAAGTTAAAGGTGTTTGTACTGAAGCTGGCATGTACGCTTTG
CGTGAACGTCGTGTTCATGTTACACAAGAAGACTTTGAGATGGCTGTTGCCAAAATTATG
CAAAAAGATTCCGAGAAGAATATGTCGATTAAAAAGTTGTGGAAGTAA
>g7951.t15 Gene=g7951 Length=177
MVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNI
KVIMATNRIDILDQALLRPGRIDRKIEFPPPNEEARGDILKIHSRKMNLTRGINLKKIAE
LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKIMQKDSEKNMSIKKLWK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g7951.t15 | CDD | cd00009 | AAA | 2 | 90 | 5.63709E-11 |
| 7 | g7951.t15 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 90 | 5.3E-30 |
| 8 | g7951.t15 | Gene3D | G3DSA:1.10.8.60 | - | 91 | 163 | 1.9E-25 |
| 3 | g7951.t15 | PANTHER | PTHR23073 | 26S PROTEASOME REGULATORY SUBUNIT | 1 | 174 | 5.1E-114 |
| 4 | g7951.t15 | PANTHER | PTHR23073:SF102 | BNAA02G04630D PROTEIN | 1 | 174 | 5.1E-114 |
| 1 | g7951.t15 | Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 2 | 89 | 4.3E-22 |
| 2 | g7951.t15 | Pfam | PF17862 | AAA+ lid domain | 113 | 155 | 2.3E-13 |
| 6 | g7951.t15 | ProSitePatterns | PS00674 | AAA-protein family signature. | 60 | 78 | - |
| 5 | g7951.t15 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2 | 160 | 6.61E-40 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0036402 | proteasome-activating activity | MF |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
